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[184404_at]

Description F39F10.5 /REP_DB=WormBase Gene ID /WP=CE07207 /TR=Q20196 /GB=AAB00617.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 09      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 44
(-0.5)
A 		12.5
(-3)
A 		41.1
(-0.7)
A 		87.6
(3)
A 		75
B 36
(1.2)
A 		46.8
(3)
A 		10.5
(-3)
A 		41.9
(2.2)
A 		36
C 7.6
(-3)
A 		41
(0.2)
A 		46.3
(0.7)
A 		69.6
(3)
A 		62
avr 29.2
(-3) 		33.4
(-2.3) 		32.6
(-2.5) 		66.4
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 56.2
(3)
A 		35.7
(0.5)
A 		20.7
(-1.3)
A 		25.6
(-0.7)
A 		38.6
(0.9)
A 		6.6
(-3)
A 		50
B 39.5
(2)
A 		18.2
(-0.9)
A 		9.6
(-2.1)
A 		33.5
(1.2)
A 		46.9
(3)
A 		3.2
(-3)
A 		44
C 60.6
(3)
A 		43.4
(1)
A 		9.2
(-3)
A 		44
(1.1)
A 		27
(-0.9)
A 		37.8
(0.3)
A 		51
avr 52.1
(3) 		32.4
(-0) 		13.2
(-3) 		34.4
(0.3) 		37.5
(0.7) 		15.9
(-2.6) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 16
(3)
A 		2.7
(-3)
A 		10.7
(0.6)
A 		12.8
(1.6)
A 		13
B 11.5
(2.9)
A 		11.6
(3)
A 		2.4
(-3)
A 		8.9
(1.2)
A 		9
C 2.5
(-3)
A 		11.8
(1.1)
A 		16.1
(3)
A 		11.7
(1.1)
A 		14
avr 10
(0.3) 		8.7
(-3) 		9.7
(-0.5) 		11.1
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 10.4
(1.8)
A 		12.7
(3)
A 		4.5
(-1.4)
A 		6.5
(-0.4)
A 		11.7
(2.5)
A 		1.6
(-3)
A 		11
B 13.7
(1.2)
A 		6.1
(-1.3)
A 		2.3
(-2.6)
A 		8.9
(-0.4)
A 		19
(3)
A 		1.2
(-3)
A 		18
C 22.5
(3)
A 		13.2
(0.2)
A 		2.3
(-3)
A 		8.8
(-1.1)
A 		8.7
(-1.1)
A 		12.6
(0.1)
A 		20
avr 15.5
(3) 		10.7
(0.7) 		3
(-3) 		8.1
(-0.6) 		13.1
(1.8) 		5.1
(-2) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184404_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17577
Sequence Type Exemplar sequence
Representative Public ID F39F10.5 NCBI
Target Description F39F10.5 /REP_DB=WormBase Gene ID /WP=CE07207 /TR=Q20196 /GB=AAB00617.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078333(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078333 NCBI Caenorhabditis elegans F39F10.5 (F39F10.5) mRNA, complete cds. 11/11 None
GENEFINDER00000020497 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16912895:16913693:-1 10/11 None
SNAP00000020495 ENSEMBL cdna:SNAP chromosome:CEL140:X:16912944:16913682:-1 10/11 None
F39F10.5 ENSEMBL cdna:known chromosome:CEL140:X:16912944:16913682:-1 gene:F39F10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16912943-16913682(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F39F10.5
Entrez Gene 185499 Entrez gene
SwissProt Q20196 EMBL-EBI
WormBase CE07207 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00617 Hypothetical protein F39F10.5 [Caenorhabditis elegans] ref|NP_510734.1| F39F10.5 [Caenorhabditis elegans] 9.0E-96
blast AAB00617 Hypothetical protein F39F10.5 [Caenorhabditis elegans] ref|NP_510734.1| F39F10.5 [Caenorhabditis elegans] 2.0E-85
blast AAB00617 Hypothetical protein F39F10.5 [Caenorhabditis elegans] ref|NP_510734.1| F39F10.5 [Caenorhabditis elegans] 1.0E-78
blast AAB53818 Hypothetical protein C08A9.5 [Caenorhabditis elegans] ref|NP_510763.1| C08A9.5 [Caenorhabditis elegans] 2.0E-41
blast AAB53818 Hypothetical protein C08A9.5 [Caenorhabditis elegans] ref|NP_510763.1| C08A9.5 [Caenorhabditis elegans] 2.0E-40
blast AAB53818 Hypothetical protein C08A9.5 [Caenorhabditis elegans] ref|NP_510763.1| C08A9.5 [Caenorhabditis elegans] 1.0E-37
blast CAA19499 Hypothetical protein Y37H2C.1 [Caenorhabditis elegans] ref|NP_507576.1| Y37H2C.1 [Caenorhabditis elegans] 3.0E-29
blast CAA19499 Hypothetical protein Y37H2C.1 [Caenorhabditis elegans] ref|NP_507576.1| Y37H2C.1 [Caenorhabditis elegans] 2.0E-28
Sequence
Target Sequence 
>C. ELEGANS:184404_AT
actattgctctttatgtgtccgttgagtattgccgtggtcaatacttcgactaccacgac
cttgaactcggccggcactataccaatcttactaccaaaggcgacctggtctcagatatc
tatcgagttgttgtagacacaaaaaatccggtaaaaattataatcagcaagataatgttt
gtatatttgcagcctccagcaatcagagtttctgtagcgtccgagaacgcctcacttaaa
cacatattggctgtgactgtggttcgtggaaagactgtgcataatattgcactctctcgt
cttcaatctcatagaaacaaacagtacgagtactggttcgctacggacacactttgcgat
aacgaccgatctattgaacagcgtggacagccagttcacgtatcagttag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTATTGCTCTTTATGTGTCCGTTG 198 103 31 Antisense
TGTCCGTTGAGTATTGCCGTGGTCA 65 557 47 Antisense
TCAATACTTCGACTACCACGACCTT 322 631 69 Antisense
GCCGGCACTATACCAATCTTACTAC 490 283 101 Antisense
GGCGACCTGGTCTCAGATATCTATC 167 541 130 Antisense
GCAGCCTCCAGCAATCAGAGTTTCT 273 315 219 Antisense
AGAACGCCTCACTTAAACACATATT 563 73 254 Antisense
TTGGCTGTGACTGTGGTTCGTGGAA 560 707 277 Antisense
TGGTTCGCTACGGACACACTTTGCG 517 549 364 Antisense
GACCGATCTATTGAACAGCGTGGAC 205 383 394 Antisense
GACAGCCAGTTCACGTATCAGTTAG 554 365 416 Antisense
Sequence Source Affymetrix Proprietary Database