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[184403_at]

Description Y56A3A.28 /REP_DB=WormBase Gene ID /WP=CE22593 /TR=Q9U235 /GB=CAB60505.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 6.3
(0.5)
A 		6
(-1)
A 		6.8
(3)
A 		5.6
(-3)
A 		1
B 3.1
(-3)
A 		8
(1.6)
A 		4.1
(-2.1)
A 		9.5
(3)
A 		6
C 5.4
(-2.5)
A 		7.6
(-2.1)
A 		2.6
(-3)
A 		36.1
(3)
A 		34
avr 4.9
(-2.8) 		7.2
(-1.7) 		4.5
(-3) 		17.1
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 29.4
(-1.5)
A 		34.1
(-1)
A 		17.7
(-3)
A 		66
(3)
A 		32.5
(-1.2)
A 		47.1
(0.7)
A 		48
B 15.6
(-1.5)
A 		2.7
(-3)
A 		21.6
(-0.8)
A 		4.6
(-2.8)
A 		25.4
(-0.4)
A 		54.9
(3)
A 		52
C 3
(-3)
A 		4
(-2.9)
A 		50.3
(3)
A 		34.2
(1)
A 		34.1
(0.9)
A 		34.7
(1)
A 		47
avr 16
(-2.6) 		13.6
(-3) 		29.9
(0.1) 		34.9
(1) 		30.7
(0.2) 		45.6
(3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 2.3
(3)
A 		1.3
(-1)
A 		1.8
(1)
A 		0.8
(-3)
A 		2
B 1
(-3)
A 		2
(3)
A 		1
(-3)
A 		2
(3)
A 		1
C 1.8
(-2)
A 		2.2
(-1.5)
A 		0.9
(-3)
A 		6.1
(3)
A 		5
avr 1.7
(-1.3) 		1.8
(-1) 		1.2
(-3) 		3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 5.4
(-2.3)
A 		12.1
(0.8)
A 		3.9
(-3)
A 		16.7
(3)
A 		9.8
(-0.2)
A 		11.5
(0.6)
A 		13
B 5.4
(-1.6)
A 		0.9
(-3)
A 		5.2
(-1.7)
A 		1.2
(-2.9)
A 		10.3
(-0.1)
A 		20.5
(3)
A 		20
C 1.1
(-3)
A 		1.2
(-2.9)
A 		12.8
(3)
A 		6.9
(-0)
A 		11
(2.1)
A 		11.6
(2.4)
A 		12
avr 4
(-3) 		4.7
(-2.6) 		7.3
(-1.1) 		8.3
(-0.5) 		10.4
(0.7) 		14.5
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184403_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6728
Sequence Type Exemplar sequence
Representative Public ID Y56A3A.28 NCBI
Target Description Y56A3A.28 /REP_DB=WormBase Gene ID /WP=CE22593 /TR=Q9U235 /GB=CAB60505.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067158
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000035209 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11961829:11969447:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067158 8/11 Cross Hyb Matching Probes None
SNAP00000035205 8/11 Cross Hyb Matching Probes None
Y56A3A.28 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11961824-11969443(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60505 Hypothetical protein Y56A3A.28 [Caenorhabditis elegans] ref|NP_499559.2| Y56A3A.28 [Caenorhabditis elegans] 4.0E-56
blast CAE67752 Hypothetical protein CBG13327 [Caenorhabditis briggsae] 4.0E-39
blast AAH29127 BC029127 protein [Mus musculus] 1.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 3.6E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000035209 1 180-202
Sequence
Target Sequence 
>C. ELEGANS:184403_AT
gcgcgccagagacgattctcattggagcgcgccatgttgtgccgatttacgatatttttt
attttatgccaaaaatgcaattttttcttcattttttttctgcacttttcctcttaaatc
gcgtgtgtgccacggaatttctggaatttaatctcacaattttggccgtagtcggagctc
cagcgaatcaggacgacggctcgaaaccaaaaatggagtgtccaacgtgcggtcttgtgc
tctataggcacaattttgcggctcatttccgaattcacactggcgaacagccgtatggat
gtgactattgtggaaagcgttttcgaacgacatcatcgttaaaagtgcacaaaagagcac
atactggagagaagccaacaattcctcgatatcaccccgaagaccaagtcgaatcgatac
cgacaacaatgaagtacactgtaaacgagaaatccgttcgagtatccgtcgcggcgacac
gccgacggcaacttcgagaagatcatacttatatatcggctgccgccgcatccacttcaa
atgagcctta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGCGCCAGAGACGATTCTCATTGG 205 287 470 Antisense
ACTTTTCCTCTTAAATCGCGTGTGT 532 101 573 Antisense
ATTTTGGCCGTAGTCGGAGCTCCAG 192 13 628 Antisense
GAGCTCCAGCGAATCAGGACGACGG 350 385 644 Antisense
AATGGAGTGTCCAACGTGCGGTCTT 495 161 681 Antisense
GTGCGGTCTTGTGCTCTATAGGCAC 559 479 696 Antisense
GCGGCTCATTTCCGAATTCACACTG 577 293 727 Antisense
AAGCCAACAATTCCTCGATATCACC 661 147 841 Antisense
AGAAATCCGTTCGAGTATCCGTCGC 91 73 917 Antisense
CGACACGCCGACGGCAACTTCGAGA 93 253 944 Antisense
CCGCATCCACTTCAAATGAGCCTTA 225 263 995 Antisense
Sequence Source Affymetrix Proprietary Database