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[184402_at]

Description K09D9.11 /REP_DB=WormBase Gene ID /WP=CE21065 /TR=Q9N5I9 /GB=AAF39929.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 19.5
(-1.8)
A 		5
(-2.9)
A 		4.1
(-3)
A 		82.4
(3)
P 		78
B 41.4
(3)
A 		5.6
(-3)
A 		8.5
(-2.5)
A 		5.3
(-3)
A 		36
C 23.8
(-1.9)
A 		5.4
(-3)
A 		5.7
(-3)
A 		109.4
(3)
M 		104
avr 28.2
(-0.7) 		5.3
(-3) 		6.1
(-2.9) 		65.7
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 6.1
(-2.5)
A 		3.1
(-3)
A 		42.4
(3)
A 		4.8
(-2.7)
A 		17.9
(-0.7)
A 		36.5
(2.1)
P 		39
B 24.6
(-0.6)
A 		35.7
(3)
A 		33.4
(2.3)
A 		22.9
(-1.1)
A 		17.1
(-3)
A 		25.2
(-0.4)
A 		19
C 2.1
(-3)
A 		34.9
(3)
A 		2.6
(-2.9)
A 		5.8
(-2.3)
A 		35.1
(3)
A 		26.8
(1.5)
A 		33
avr 10.9
(-3) 		24.6
(1.4) 		26.1
(1.9) 		11.2
(-2.9) 		23.4
(1) 		29.5
(3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 7.1
(0.3)
A 		1.1
(-3)
A 		1.1
(-3)
A 		12.1
(3)
P 		11
B 13.2
(3)
A 		1.4
(-2.9)
A 		2
(-2.6)
A 		1.1
(-3)
A 		12
C 7.9
(-0.8)
A 		1.6
(-3)
A 		2
(-2.9)
A 		18.5
(3)
M 		17
avr 9.4
(2.2) 		1.4
(-3) 		1.7
(-2.8) 		10.6
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.1
(-3)
A 		1.1
(-3)
A 		9.2
(3)
A 		1.2
(-2.9)
A 		5.4
(0.2)
A 		8.9
(2.8)
P 		8
B 8.5
(-0.5)
A 		11.9
(3)
A 		8.1
(-0.9)
A 		6.1
(-3)
A 		7
(-2.1)
A 		9.4
(0.4)
A 		6
C 0.8
(-2.9)
A 		10.7
(2.6)
A 		0.7
(-3)
A 		1.2
(-2.7)
A 		11.4
(3)
A 		9
(1.7)
A 		11
avr 3.5
(-2.3) 		7.9
(1.9) 		6
(0) 		2.8
(-3) 		7.9
(1.9) 		9.1
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184402_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15463
Sequence Type Exemplar sequence
Representative Public ID K09D9.11 NCBI
Target Description K09D9.11 /REP_DB=WormBase Gene ID /WP=CE21065 /TR=Q9N5I9 /GB=AAF39929.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071714(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071714 NCBI Caenorhabditis elegans K09D9.11 (K09D9.11) mRNA, complete cds. 11/11 None
GENEFINDER00000015713 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3996937:4001278:-1 11/11 None
K09D9.11 ENSEMBL cdna:known chromosome:CEL140:V:3996937:4001278:-1 gene:K09D9.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015704 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3996936-4001278(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09D9.11
Entrez Gene 187213 Entrez gene
SwissProt Q9N5I9 EMBL-EBI
WormBase CE21065 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39929 Hypothetical protein K09D9.11 [Caenorhabditis elegans] ref|NP_504115.1| K09D9.11 [Caenorhabditis elegans] 0.0
blast CAB04180 Hypothetical protein F26D2.10 [Caenorhabditis elegans] ref|NP_507152.1| F26D2.10 [Caenorhabditis elegans] 0.0
blast CAB04319 Hypothetical protein F36D3.5 [Caenorhabditis elegans] ref|NP_507181.1| F36D3.5 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 4.6E-22
Pfam IPR001357 EMBL-EBI BRCT 1.2E-12
Pfam IPR002110 EMBL-EBI Ankyrin 1.9E-8
Pfam IPR001357 EMBL-EBI BRCT 9.2E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504115.1 1 462-484
K09D9.11 1 462-484
GENEFINDER00000015713 1 462-484
Sequence
Target Sequence 
>C. ELEGANS:184402_AT
taacatccgatgaagctatgcccacgaccactcatgtagtagtgaaaaaaaatgagcacg
gaatcctggaaactgaccagttggaaattttgatctggatattcaatggtgctataattg
ttaaagaagaatggatgacagattgtttggcggacggaaaacttattgagcacgattcaa
agtatttagttgagagtgtcaagtacaagggcgttacttacaatacaatcattcaatgga
gtgagtcaatggccaagggaatgatgccatacatgcacggtgtatttttggctattgtga
tgaaaaaatgcaagaacttggcatccctcactattctagcaacatcccaaggaggttttg
tgatggactctttcccagataaaaaccttttcaacgctaaatctcacccgtaccatcact
cacgcattgggccactcattttgattcatgacggaacgatggatctgagtgcatacaaaa
acgatccggacgagatgtacactctgtttactgaagaagaatttatccattttttgctga
aacgagacatttctagagacaccagcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACATCCGATGAAGCTATGCCCAC 566 639 1997 Antisense
GAGCACGGAATCCTGGAAACTGACC 641 387 2050 Antisense
AGGGCGTTACTTACAATACAATCAT 106 59 2204 Antisense
GAATGATGCCATACATGCACGGTGT 30 331 2255 Antisense
ATGCAAGAACTTGGCATCCCTCACT 60 45 2304 Antisense
TCACTATTCTAGCAACATCCCAAGG 218 627 2324 Antisense
GAGGTTTTGTGATGGACTCTTTCCC 98 403 2348 Antisense
TTTCAACGCTAAATCTCACCCGTAC 507 671 2385 Antisense
CGCATTGGGCCACTCATTTTGATTC 486 253 2419 Antisense
GACGAGATGTACACTCTGTTTACTG 188 379 2485 Antisense
GAGACATTTCTAGAGACACCAGCAA 200 393 2540 Antisense
Sequence Source Affymetrix Proprietary Database