[Home] | [Total List]

[184401_at]

Description F27C1.10 /REP_DB=WormBase Gene ID /WP=CE09722 /TR=P91288 /GB=AAB37659.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 15      4grp_high_8_8 > 26      6grp_total > 15      4grp_total > 30      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 130.8
(3)
P 		42.9
(-1.6)
A 		17.1
(-3)
A 		98.8
(1.3)
A 		114
B 98.7
(3)
P 		32.8
(-3)
M 		46.5
(-1.8)
A 		81.8
(1.5)
P 		66
C 141.1
(3)
P 		80.6
(-0.6)
P 		39.7
(-3)
P 		110.8
(1.2)
P 		101
avr 123.5
(3) 		52.1
(-1.8) 		34.4
(-3) 		97.1
(1.2) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 98.2
(2.1)
P 		106.6
(3)
P 		47.6
(-3)
P 		86.1
(0.9)
P 		83.8
(0.7)
P 		54.3
(-2.3)
A 		59
B 124.8
(3)
P 		105.2
(1.4)
P 		93.2
(0.4)
P 		72
(-1.4)
P 		62.3
(-2.2)
P 		53
(-3)
P 		72
C 85.8
(1.4)
P 		97.4
(3)
P 		75.6
(-0)
P 		69
(-0.9)
P 		54.1
(-3)
A 		72.9
(-0.4)
P 		43
avr 102.9
(3) 		103.1
(3) 		72.1
(-1.3) 		75.7
(-0.8) 		66.7
(-2.1) 		60.1
(-3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 47.6
(3)
P 		9.3
(-2.3)
A 		4.5
(-3)
A 		14.5
(-1.6)
A 		43
B 31.5
(3)
P 		8.1
(-3)
M 		10.8
(-2.3)
A 		17.4
(-0.6)
P 		23
C 46.7
(3)
P 		23.2
(-1.3)
P 		13.8
(-3)
P 		18.7
(-2.1)
P 		33
avr 41.9
(3) 		13.5
(-2.3) 		9.7
(-3) 		16.9
(-1.7) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 18.1
(-1.3)
P 		37.9
(3)
P 		10.4
(-3)
P 		21.8
(-0.5)
P 		25.3
(0.3)
P 		13.2
(-2.4)
A 		28
B 43.4
(3)
P 		35
(0.9)
P 		22.6
(-2.1)
P 		19.1
(-3)
P 		25.3
(-1.5)
P 		19.8
(-2.8)
P 		24
C 31.8
(3)
P 		29.7
(2.3)
P 		19.2
(-1.2)
P 		13.9
(-3)
P 		17.5
(-1.8)
A 		24.4
(0.5)
P 		18
avr 31.1
(1.9) 		34.2
(3) 		17.4
(-3) 		18.3
(-2.7) 		22.7
(-1.1) 		19.1
(-2.4) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184401_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2172
Sequence Type Exemplar sequence
Representative Public ID F27C1.10 NCBI
Target Description F27C1.10 /REP_DB=WormBase Gene ID /WP=CE09722 /TR=P91288 /GB=AAB37659.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059197(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059197 NCBI Caenorhabditis elegans F27C1.10 (F27C1.10) mRNA, complete cds. 11/11 A 
SNAP00000014506 ENSEMBL cdna:SNAP chromosome:CEL140:I:5434094:5442892:-1 10/11 None
GENEFINDER00000014521 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5435815:5446340:-1 10/11 None
F27C1.10 ENSEMBL cdna:known chromosome:CEL140:I:5433575:5436785:-1 gene:F27C1.10 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5435760-5436785(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F27C1.10
Entrez Gene 185008 Entrez gene
SwissProt P91288 EMBL-EBI
WormBase CE30521 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37660 Hypothetical protein F27C1.11 [Caenorhabditis elegans] ref|NP_491599.2| F27C1.11 [Caenorhabditis elegans] 0.0
blast CAE67066 Hypothetical protein CBG12474 [Caenorhabditis briggsae] 0.0
blast AAB37659 Hypothetical protein F27C1.10 [Caenorhabditis elegans] ref|NP_491598.2| F27C1.10 [Caenorhabditis elegans] 1.0E-178
blast AAB37659 Hypothetical protein F27C1.10 [Caenorhabditis elegans] ref|NP_491598.2| F27C1.10 [Caenorhabditis elegans] 1.0E-133
blast AAB37659 Hypothetical protein F27C1.10 [Caenorhabditis elegans] ref|NP_491598.2| F27C1.10 [Caenorhabditis elegans] 4.0E-90
blast CAE67066 Hypothetical protein CBG12474 [Caenorhabditis briggsae] 2.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR003533 EMBL-EBI Doublecortin 1.9E-5
Pfam IPR001024 EMBL-EBI Lipoxygenase, LH2 domain 8.8E-21
Pfam IPR000048 EMBL-EBI IQ calmodulin-binding region 2.8E-5
Pfam IPR003533 EMBL-EBI Doublecortin 1.4E-9
Pfam IPR003533 EMBL-EBI Doublecortin 1.9E-5
Pfam IPR001024 EMBL-EBI Lipoxygenase, LH2 domain 8.8E-21
Pfam IPR000048 EMBL-EBI IQ calmodulin-binding region 2.8E-5
Sequence
Target Sequence 
>C. ELEGANS:184401_AT
aaagctgcgggagcaagtttgcaaaattcaaaatttcaggaaaaatctgccaatcatcat
catccaataattccaacagttgtactggtgaccagagatcgacaaatttttgaaatggaa
tgtgaaatggaaaccccagagcctcgaggttcaatgatgtttttaagatatacgttaact
actacaaactttggaaatccgtttaaagttcgattatcaagtgaggaagatggtccagat
gtagaaacccatgttcataagatgatgctcaacgagctggagtcgaaaacttgcgtgttt
ttcaaagtttcatgggaactgcaagcatttgaaacgattgagcaggagtgcacatatcca
gatgttggagataatggaagccgcgattatgaagtacacattcgaaccttggaaggcggc
ggaaacttccgaccgtacattaatataatcggagacaacggagataccggacacagacca
tatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCTGCGGGAGCAAGTTTGCAAA 60 125 130 Antisense
AATCTGCCAATCATCATCATCCAAT 518 169 173 Antisense
ACTGGTGACCAGAGATCGACAAATT 554 95 213 Antisense
TGAAATGGAAACCCCAGAGCCTCGA 586 571 252 Antisense
AGAGCCTCGAGGTTCAATGATGTTT 163 71 267 Antisense
GAGCTGGAGTCGAAAACTTGCGTGT 102 387 403 Antisense
GAGCAGGAGTGCACATATCCAGATG 306 389 469 Antisense
GGAAGCCGCGATTATGAAGTACACA 199 531 505 Antisense
GTACACATTCGAACCTTGGAAGGCG 198 461 523 Antisense
GAAACTTCCGACCGTACATTAATAT 112 357 551 Antisense
GAGATACCGGACACAGACCATATGC 113 397 590 Antisense
Sequence Source Affymetrix Proprietary Database