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[184400_at]

Description F22H10.2 /REP_DB=WormBase Gene ID /WP=CE09571 /TR=Q94189 /GB=AAB09100.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 62      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 183.8
(3)
A 		154.2
(-0.2)
A 		127.7
(-3)
A 		155
(-0.1)
A 		56
B 187.2
(3)
A 		167.5
(1.6)
A 		181.2
(2.6)
A 		105.4
(-3)
A 		82
C 239.4
(3)
A 		168.5
(-0)
A 		165.3
(-0.2)
A 		99.3
(-3)
A 		140
avr 203.5
(3) 		163.4
(0.1) 		158.1
(-0.3) 		119.9
(-3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 545
1 2 3 4 5 6 range
A 300.7
(-0.2)
M 		172.2
(-1.8)
A 		139.3
(-2.3)
A 		90.9
(-2.9)
A 		81.5
(-3)
A 		552.5
(3)
P 		471
B 348.9
(0.5)
P 		165.4
(-1.8)
A 		120.9
(-2.3)
A 		64.1
(-3)
A 		129.3
(-2.2)
A 		556.6
(3)
P 		493
C 303.3
(-0.5)
P 		167.9
(-2.1)
A 		135.6
(-2.4)
A 		86
(-3)
A 		92.4
(-2.9)
A 		608.6
(3)
P 		523
avr 317.6
(-0.1) 		168.5
(-1.9) 		131.9
(-2.4) 		80.3
(-3) 		101.1
(-2.7) 		572.6
(3) 		492
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 66.9
(3)
A 		33.5
(-1.5)
A 		33.4
(-1.5)
A 		22.7
(-3)
A 		44
B 59.7
(3)
A 		41.4
(0)
A 		42
(0.1)
A 		22.5
(-3)
A 		37
C 79.2
(3)
A 		48.4
(0)
A 		57.6
(0.9)
A 		16.7
(-3)
A 		63
avr 68.6
(3) 		41.1
(-0.4) 		44.3
(-0) 		20.6
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 55.4
(-1.3)
M 		61.2
(-0.9)
A 		30.3
(-2.6)
A 		23.1
(-3)
A 		24.6
(-2.9)
A 		134.5
(3)
P 		111
B 121.4
(0.3)
P 		55.1
(-1.8)
A 		29.4
(-2.6)
A 		17
(-3)
A 		52.5
(-1.9)
A 		207.5
(3)
P 		191
C 112.4
(0.1)
P 		51.2
(-1.9)
A 		34.5
(-2.4)
A 		17.3
(-3)
A 		29.9
(-2.6)
A 		203.7
(3)
P 		186
avr 96.4
(-0.2) 		55.8
(-1.6) 		31.4
(-2.5) 		19.1
(-3) 		35.7
(-2.4) 		181.9
(3) 		163
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184400_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17517
Sequence Type Exemplar sequence
Representative Public ID F22H10.2 NCBI
Target Description F22H10.2 /REP_DB=WormBase Gene ID /WP=CE09571 /TR=Q94189 /GB=AAB09100.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078293(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078293 NCBI Caenorhabditis elegans F22H10.2 (F22H10.2) mRNA, complete cds. 11/11 None
SNAP00000018978 ENSEMBL cdna:SNAP chromosome:CEL140:X:16679453:16679710:1 11/11 None
GENEFINDER00000018989 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16679453:16679737:1 11/11 None
F22H10.2 ENSEMBL cdna:known chromosome:CEL140:X:16678401:16679710:1 gene:F22H10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16678400-16679710(+) 71.52 100.0
Public Domain and Genome References
Gene Title
Ensembl F22H10.2
Entrez Gene 184872 Entrez gene
SwissProt Q94189 EMBL-EBI
WormBase CE09571 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB09100 Hypothetical protein F22H10.2 [Caenorhabditis elegans] ref|NP_510694.1| F22H10.2 [Caenorhabditis elegans] 9.0E-12
Sequence
Target Sequence 
>C. ELEGANS:184400_AT
tacaacccgtacggacaacagggatttgctcctccaccagtattcggtggtccaggaggc
tatgctccgccaactgttcatgttcacaataacggagggcatcatcatgggcaccatcac
catcaccatcatggattactccatggtcttggacatgctttgactggaggacatcatcat
catcaccatcacggtggacatcatttcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAACCCGTACGGACAACAGGGAT 654 639 82 Antisense
GCTCCTCCACCAGTATTCGGTGGTC 626 297 109 Antisense
TTCGGTGGTCCAGGAGGCTATGCTC 465 695 124 Antisense
TCCGCCAACTGTTCATGTTCACAAT 144 597 147 Antisense
GTTCATGTTCACAATAACGGAGGGC 599 235 157 Antisense
TAACGGAGGGCATCATCATGGGCAC 396 637 171 Antisense
CATCACCATCATGGATTACTCCATG 263 213 202 Antisense
GATTACTCCATGGTCTTGGACATGC 237 431 215 Antisense
GGTCTTGGACATGCTTTGACTGGAG 246 503 226 Antisense
ATGCTTTGACTGGAGGACATCATCA 435 43 236 Antisense
CCATCACGGTGGACATCATTTCGGA 418 271 267 Antisense
Sequence Source Affymetrix Proprietary Database