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[184399_at]

Description Y26D4A.10 /REP_DB=WormBase Gene ID /WP=CE21490 /TR=Q9U2P8 /GB=CAB54346.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 25.8
(-0.5)
A 		52.3
(3)
A 		34.3
(0.6)
A 		7.5
(-3)
A 		45
B 31.4
(2.3)
A 		3.1
(-3)
A 		34.9
(3)
A 		17.8
(-0.2)
A 		32
C 36.8
(-0.9)
A 		9.9
(-3)
A 		51.6
(0.2)
A 		87.9
(3)
A 		78
avr 31.3
(0.1) 		21.8
(-3) 		40.3
(3) 		37.7
(2.2) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 31.1
(3)
A 		10.7
(-3)
A 		19.7
(-0.3)
P 		23.2
(0.7)
A 		10.6
(-3)
A 		17.2
(-1.1)
A 		21
B 34.8
(3)
A 		33.8
(2.8)
A 		6.2
(-3)
A 		29.6
(1.9)
A 		26.6
(1.3)
P 		29.7
(1.9)
A 		29
C 3.9
(-2.9)
A 		5.7
(-2.6)
A 		16.1
(-0.8)
A 		38.2
(3)
A 		23.3
(0.4)
A 		3.3
(-3)
A 		35
avr 23.3
(0.4) 		16.7
(-2) 		14
(-3) 		30.3
(3) 		20.2
(-0.7) 		16.7
(-2) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 9.4
(1.9)
A 		11.3
(3)
A 		9
(1.6)
A 		1.1
(-3)
A 		10
B 10
(3)
A 		0.8
(-3)
A 		8.1
(1.8)
A 		3.8
(-1)
A 		9
C 12.2
(0.7)
A 		2.8
(-3)
A 		18
(3)
A 		14.8
(1.7)
A 		15
avr 10.5
(1.9) 		5
(-3) 		11.7
(3) 		6.6
(-1.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 5.7
(2.6)
A 		3.8
(-1.7)
A 		4.3
(-0.6)
P 		5.9
(3)
A 		3.2
(-3)
A 		4.2
(-0.8)
A 		3
B 12.1
(3)
A 		11.2
(2.5)
A 		1.5
(-3)
A 		7.8
(0.6)
A 		10.8
(2.3)
P 		11.1
(2.4)
A 		11
C 1.4
(-2.7)
A 		1.7
(-2.5)
A 		4.1
(-0.3)
A 		7.7
(3)
A 		7.6
(2.9)
A 		1.1
(-3)
A 		7
avr 6.4
(1.8) 		5.6
(0.5) 		3.3
(-3) 		7.1
(2.8) 		7.2
(3) 		5.5
(0.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184399_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2168
Sequence Type Exemplar sequence
Representative Public ID Y26D4A.10 NCBI
Target Description Y26D4A.10 /REP_DB=WormBase Gene ID /WP=CE21490 /TR=Q9U2P8 /GB=CAB54346.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060891(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060891 NCBI Caenorhabditis elegans Y26D4A.10 (Y26D4A.10) mRNA, complete cds. 11/11 None
SNAP00000013486 ENSEMBL cdna:SNAP chromosome:CEL140:I:13109476:13110021:1 9/11 None
GENEFINDER00000013610 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13109476:13110021:1 9/11 None
Y26D4A.10 ENSEMBL cdna:known chromosome:CEL140:I:13106807:13110021:1 gene:Y26D4A.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13106737-13109952(+) 98.48 100.0
chrI:10312596-10313841(-) 72.46 73.98
chrX:17256469-17259496(-) 79.4 80.93
Public Domain and Genome References
Gene Title
Ensembl Y26D4A.10
Entrez Gene 189550 Entrez gene
SwissProt Q9U2P8 EMBL-EBI
WormBase CE21490 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54346 Hypothetical protein Y26D4A.10 [Caenorhabditis elegans] ref|NP_493292.1| Y26D4A.10 [Caenorhabditis elegans] 0.0
blast NP_510800 Y40C7B.3 [Caenorhabditis elegans] gb|AAF60543.1| Hypothetical protein Y40C7B.3 [Caenorhabditis elegans] 0.0
blast CAB04746 Hypothetical protein T20F10.4 [Caenorhabditis elegans] ref|NP_492703.1| T20F10.4 [Caenorhabditis elegans] 0.0
blast CAB54346 Hypothetical protein Y26D4A.10 [Caenorhabditis elegans] ref|NP_493292.1| Y26D4A.10 [Caenorhabditis elegans] 7.0E-69
blast NP_510798 Y40C7B.4 [Caenorhabditis elegans] gb|AAF60544.1| Hypothetical protein Y40C7B.4 [Caenorhabditis elegans] 2.0E-46
Sequence
Target Sequence 
>C. ELEGANS:184399_AT
aaaagcattgcttcaagtacaaaatgttattgtttagtaatgagtgaaaatatagtagaa
ataaaagataatagaattaaagttattagtagacaaaatgaggctgatcgtattaagaaa
atgatatctaaaagggatgtattggctgcaaaactcagagttctggatgatgatataaga
aatgaagtggcacgaatgaatgctcgtcgtgaggcatatgatttagatgttgcgagtaaa
atgagacgcgaggatgctaccctcagtttgaggaaaagaaaactcatgcaaatggataat
cgtcttgataatgaagcagacatccttgaaaaaagagctagagctcttgaagatcaaaaa
tgtaagattcatccaaccgacgaccacaccaacttctctcgctccaacttctccgactat
ccgaatgagtatgctgacacttcaggcaattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAGCATTGCTTCAAGTACAAAAT 596 131 1168 Antisense
AGTAGACAAAATGAGGCTGATCGTA 73 63 1255 Antisense
AAGGGATGTATTGGCTGCAAAACTC 229 159 1299 Antisense
GCTCGTCGTGAGGCATATGATTTAG 250 299 1369 Antisense
TGAGACGCGAGGATGCTACCCTCAG 15 569 1409 Antisense
GAGGATGCTACCCTCAGTTTGAGGA 367 403 1417 Antisense
GATAATGAAGCAGACATCCTTGAAA 309 423 1474 Antisense
TGTAAGATTCATCCAACCGACGACC 173 553 1528 Antisense
CAACTTCTCCGACTATCCGAATGAG 380 189 1572 Antisense
ATCCGAATGAGTATGCTGACACTTC 587 37 1586 Antisense
GTATGCTGACACTTCAGGCAATTCA 445 455 1596 Antisense
Sequence Source Affymetrix Proprietary Database