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[184398_s_at]

Description ZC204.14 /REP_DB=WormBase Gene ID /WP=CE15110 /TR=P91546 /GB=AAB37920.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 54      4grp_highest_8_8 > 13      4grp_high_8_8 > 31      6grp_highest_nonorm > 91      6grp_total > 55      4grp_total > 24      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 244
1 2 3 4 range
A 125.2
(-3)
P 		219.4
(2.6)
P 		226.1
(3)
P 		176.2
(0)
P 		101
B 168.6
(-3)
P 		206.4
(0.6)
P 		231
(3)
P 		220.8
(2)
P 		62
C 154.1
(-3)
P 		188.1
(-2.1)
P 		233.2
(-0.8)
P 		369
(3)
P 		215
avr 149.3
(-3) 		204.6
(0.1) 		230.1
(1.6) 		255.3
(3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 214.1
(-1.2)
P 		206.9
(-1.7)
P 		269.1
(3)
P 		208.8
(-1.6)
P 		190.1
(-3)
P 		236.6
(0.5)
P 		79
B 155.3
(-3)
P 		209.2
(0.6)
P 		220
(1.4)
P 		166.5
(-2.2)
P 		179.3
(-1.4)
P 		244.5
(3)
P 		89
C 171.9
(-2.1)
P 		237.1
(2.8)
P 		204.8
(0.3)
P 		220
(1.5)
P 		159.9
(-3)
P 		240.4
(3)
P 		81
avr 180.4
(-2.6) 		217.7
(0.9) 		231.3
(2.1) 		198.4
(-0.9) 		176.4
(-3) 		240.5
(3) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 45.6
(0.6)
P 		47.6
(0.9)
P 		59.1
(3)
P 		25.8
(-3)
P 		33
B 53.8
(3)
P 		51
(0.5)
P 		53.5
(2.7)
P 		47
(-3)
P 		7
C 51
(-3)
P 		54.1
(-2.4)
P 		81.3
(3)
P 		62.2
(-0.8)
P 		30
avr 50.1
(-1.4) 		50.9
(-1.2) 		64.6
(3) 		45
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 39.5
(-3)
P 		73.6
(3)
P 		58.6
(0.4)
P 		53
(-0.6)
P 		57.4
(0.1)
P 		57.6
(0.2)
P 		34
B 54
(-1.7)
P 		69.6
(0.2)
P 		53.4
(-1.8)
P 		44.1
(-3)
P 		72.9
(0.7)
P 		91.2
(3)
P 		47
C 63.7
(0.2)
P 		72.4
(1.7)
P 		52.1
(-1.7)
P 		44.2
(-3)
P 		51.8
(-1.7)
P 		80.5
(3)
P 		36
avr 52.4
(-1.9) 		71.9
(2.1) 		54.7
(-1.4) 		47.1
(-3) 		60.7
(-0.2) 		76.4
(3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184398_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5299
Sequence Type Exemplar sequence
Representative Public ID ZC204.14 NCBI
Target Description ZC204.14 /REP_DB=WormBase Gene ID /WP=CE15110 /TR=P91546 /GB=AAB37920.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062314(11), NM_061630(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062314 NCBI Caenorhabditis elegans W06A11.4 (W06A11.4) mRNA, complete cds. 11/11 A 
NM_061630 NCBI Caenorhabditis elegans ZC204.14 (ZC204.14) mRNA, complete cds. 11/11 None
SNAP00000019977 ENSEMBL cdna:SNAP chromosome:CEL140:II:4056481:4057647:1 11/11 None
GENEFINDER00000019982 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4056481:4058627:1 11/11 None
SNAP00000031418 ENSEMBL cdna:SNAP chromosome:CEL140:II:1661921:1670058:-1 11/11 None
GENEFINDER00000031421 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1661704:1662480:-1 11/11 None
ZC204.14 ENSEMBL cdna:known chromosome:CEL140:II:1661921:1662480:-1 gene:ZC204.14 11/11 None
W06A11.4 ENSEMBL cdna:known chromosome:CEL140:II:4055933:4057647:1 gene:W06A11.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4056479-4057658(+) 96.71 96.71
chrII:1661919-1662479(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl ZC204.14
W06A11.4
Entrez Gene 189235 Entrez gene
191117 Entrez gene
SwissProt Q23180 EMBL-EBI
P91546 EMBL-EBI
WormBase CE05042 Wormbase
CE15110 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82409 Hypothetical protein W06A11.4 [Caenorhabditis elegans] ref|NP_494715.1| W06A11.4 [Caenorhabditis elegans] 0.0
blast AAA82409 Hypothetical protein W06A11.4 [Caenorhabditis elegans] ref|NP_494715.1| W06A11.4 [Caenorhabditis elegans] 1.0E-169
blast AAA82409 Hypothetical protein W06A11.4 [Caenorhabditis elegans] ref|NP_494715.1| W06A11.4 [Caenorhabditis elegans] 1.0E-165
blast AAB37921 Serpentine receptor, class w protein 97 [Caenorhabditis elegans] ref|NP_494034.1| Serpentine Receptor, class W family member (srw-97) [Caenorhabditis elegans] 1.0E-135
blast AAC78163 Serpentine receptor, class w protein 98 [Caenorhabditis elegans] ref|NP_503479.2| Serpentine Receptor, class W family member (srw-98) [Caenorhabditis elegans] 3.0E-83
blast AAB37920 Hypothetical protein ZC204.14 [Caenorhabditis elegans] ref|NP_494031.1| ZC204.14 [Caenorhabditis elegans] 1.0E-81
blast AAB37920 Hypothetical protein ZC204.14 [Caenorhabditis elegans] ref|NP_494031.1| ZC204.14 [Caenorhabditis elegans] 1.0E-80
blast AAB37920 Hypothetical protein ZC204.14 [Caenorhabditis elegans] ref|NP_494031.1| ZC204.14 [Caenorhabditis elegans] 5.0E-74
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000019982 1 320-342
SNAP00000031418 7 10-27,34-56,95-114,127-149,181-198,211-233,248-270
GENEFINDER00000031421 1 141-163
Sequence
Target Sequence 
>C. ELEGANS:184398_S_AT
aaatagtactgtgccaatggaacccgacactgattctggatcgcctttttcgaatagata
tgcttctaaccgatcttcacaagtgaaacctattcgaagtgatcctccagattcagaaga
cttgcgctcgaaggaacatcaggtcttcatgtttcatctgaaccaggatacgatgttcca
gaagaaaatccaaaaaaatatgccaagctgtagtgatgatgtggctaatactcttgtctc
gtcgtttatgccagaaattggctcgatactacaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATAGTACTGTGCCAATGGAACCC 346 87 102 Antisense
CTGATTCTGGATCGCCTTTTTCGAA 492 227 131 Antisense
GCCTTTTTCGAATAGATATGCTTCT 341 279 144 Antisense
ATATGCTTCTAACCGATCTTCACAA 425 21 159 Antisense
TTGCGCTCGAAGGAACATCAGGTCT 244 701 223 Antisense
AGGTCTTCATGTTTCATCTGAACCA 49 59 242 Antisense
GAACCAGGATACGATGTTCCAGAAG 614 345 261 Antisense
TATGCCAAGCTGTAGTGATGATGTG 279 657 300 Antisense
GATGTGGCTAATACTCTTGTCTCGT 256 409 319 Antisense
TCTTGTCTCGTCGTTTATGCCAGAA 660 617 333 Antisense
CCAGAAATTGGCTCGATACTACAAC 707 259 352 Antisense
Sequence Source Affymetrix Proprietary Database