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[184396_at]

Description C46H11.2 /REP_DB=WormBase Gene ID /WP=CE08784 /TR=Q9GYJ1 /GB=AAF99881.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 51      4grp_highest_8_8 > 42      4grp_high_8_8 > 40      6grp_highest_nonorm > 42      6grp_total > 51      4grp_total > 55      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 844
1 2 3 4 range
A 833.2
(3)
P 		403.3
(-1.3)
P 		394.2
(-1.4)
P 		235
(-3)
P 		598
B 866.2
(3)
P 		404.8
(-1.2)
P 		385.3
(-1.4)
P 		209.4
(-3)
P 		657
C 1053.8
(3)
P 		411.5
(-1.7)
P 		469.7
(-1.3)
P 		238.4
(-3)
P 		815
avr 917.7
(3) 		406.5
(-1.4) 		416.4
(-1.4) 		227.6
(-3) 		690

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 342
1 2 3 4 5 6 range
A 633.6
(-1.8)
P 		856.3
(2.8)
P 		852.9
(2.8)
P 		864.3
(3)
P 		651.8
(-1.4)
P 		575.5
(-3)
P 		289
B 607.9
(-3)
P 		744.2
(-0.2)
P 		902.6
(3)
P 		784.7
(0.6)
P 		705.9
(-1)
P 		623.4
(-2.7)
P 		295
C 714.4
(-0.9)
P 		767.4
(0.1)
P 		916.1
(3)
P 		917.8
(3)
P 		602.7
(-3)
P 		640.3
(-2.3)
P 		315
avr 652
(-2.2) 		789.3
(0.8) 		890.5
(3) 		855.6
(2.2) 		653.5
(-2.1) 		613.1
(-3) 		277
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 314
1 2 3 4 range
A 303.4
(3)
P 		87.5
(-1.8)
P 		103
(-1.5)
P 		34.4
(-3)
P 		269
B 276.2
(3)
P 		100
(-1.6)
P 		89.3
(-1.8)
P 		44.6
(-3)
P 		232
C 348.8
(3)
P 		118.3
(-1.5)
P 		163.7
(-0.6)
P 		40.2
(-3)
P 		309
avr 309.5
(3) 		101.9
(-1.6) 		118.7
(-1.2) 		39.7
(-3) 		270

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 188
1 2 3 4 5 6 range
A 116.8
(-3)
P 		304.5
(3)
P 		185.8
(-0.8)
P 		219.2
(0.3)
P 		196.7
(-0.4)
P 		140.1
(-2.3)
P 		188
B 211.5
(-2.7)
P 		247.7
(0)
P 		219.2
(-2.1)
P 		207.8
(-3)
P 		286.8
(3)
P 		232.5
(-1.1)
P 		79
C 264.8
(3)
P 		234.2
(0.7)
P 		233.2
(0.6)
P 		184.6
(-3)
P 		195
(-2.2)
P 		214.4
(-0.8)
P 		80
avr 197.7
(-2.8) 		262.1
(3) 		212.7
(-1.5) 		203.9
(-2.3) 		226.2
(-0.2) 		195.7
(-3) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184396_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2156
Sequence Type Exemplar sequence
Representative Public ID C46H11.2 NCBI
Target Description C46H11.2 /REP_DB=WormBase Gene ID /WP=CE08784 /TR=Q9GYJ1 /GB=AAF99881.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059109(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059109 NCBI Caenorhabditis elegans C46H11.2 (C46H11.2) mRNA, complete cds. 11/11 A 
SNAP00000043108 ENSEMBL cdna:SNAP chromosome:CEL140:I:5050131:5054413:1 11/11 None
GENEFINDER00000043163 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5050131:5052474:1 11/11 None
C46H11.2 ENSEMBL cdna:known chromosome:CEL140:I:5050097:5052474:1 gene:C46H11.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5050130-5052474(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C46H11.2
Entrez Gene 172131 Entrez gene
SwissProt Q9GYJ1 EMBL-EBI
WormBase CE08784 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:265119_AT flavin-containing monooxygenase family protein / FMO family protein at
ATGENOME1:18596_AT flavin-containing monooxygenase family protein / FMO family protein at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
15036 disulfide oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF99881 Hypothetical protein C46H11.2 [Caenorhabditis elegans] ref|NP_491510.1| C46H11.2 [Caenorhabditis elegans] 0.0
blast CAE65725 Hypothetical protein CBG10808 [Caenorhabditis briggsae] 0.0
blast CAA95783 Hypothetical protein C01H6.4 [Caenorhabditis elegans] ref|NP_492038.2| C01H6.4 [Caenorhabditis elegans] 1.0E-122
Protein Domains
Database ID Description E-Value
Pfam IPR000960 EMBL-EBI Flavin-containing monooxygenase FMO 2.9E-21
Sequence
Target Sequence 
>C. ELEGANS:184396_AT
gtatccaacacttcctgataatatcactcaaatcagtcaacacgtgaaacaagtagtacc
tgaagggtgtgaaactgatgatggaactcttattactgccgatgctatcattgtttgtac
cggatatttttataagtacccattcctcagtgacaatatacttcgggtaaaagaaaacaa
tcaactggtatcaccaatattcgaacatgttgttcatgcagaatacccgaatagtttata
ttttattggtctcaatcttgtcacaattacgtttccactatttgaatatcaagtaaagat
ggcactgtcatttgcaacgggtcgagcgccaatcccagatcggaaaatgttgattgatta
cgagaaaaatcaaattgaacatcaaaagtctcgtggcctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATCCAACACTTCCTGATAATATC 509 455 624 Antisense
ATATCACTCAAATCAGTCAACACGT 622 19 644 Antisense
AACTCTTATTACTGCCGATGCTATC 92 141 708 Antisense
CGATGCTATCATTGTTTGTACCGGA 80 249 723 Antisense
TTATAAGTACCCATTCCTCAGTGAC 684 677 753 Antisense
GGTATCACCAATATTCGAACATGTT 370 505 810 Antisense
ATGTTGTTCATGCAGAATACCCGAA 223 47 830 Antisense
ATTTTATTGGTCTCAATCTTGTCAC 41 15 863 Antisense
ATCTTGTCACAATTACGTTTCCACT 440 29 878 Antisense
TAAAGATGGCACTGTCATTTGCAAC 623 639 917 Antisense
GAACATCAAAAGTCTCGTGGCCTCG 252 351 1000 Antisense
Sequence Source Affymetrix Proprietary Database