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[184394_s_at]

Description Y73F8A.24 /REP_DB=WormBase Gene ID /WP=CE25592 /TR=Q9NA35 /GB=CAB70230.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 92      6grp_total > 69      4grp_total > 53      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 230.1
(0.1)
P 		260.1
(3)
P 		197.1
(-3)
P 		204.3
(-2.3)
P 		63
B 287
(3)
P 		184.1
(-0.6)
P 		215.6
(0.5)
P 		117.6
(-3)
P 		169
C 197.8
(-2.6)
P 		254.6
(3)
P 		193.7
(-3)
P 		201.9
(-2.2)
P 		61
avr 238.3
(3) 		232.9
(2.5) 		202.1
(-0.4) 		174.6
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 305
1 2 3 4 5 6 range
A 293.3
(0.9)
P 		188.9
(-3)
P 		230.4
(-1.5)
P 		198.4
(-2.6)
P 		351.5
(3)
P 		257.7
(-0.5)
P 		163
B 294.1
(-1.3)
P 		238.2
(-3)
P 		236.9
(-3)
P 		335.2
(-0.1)
P 		371
(1)
P 		439.5
(3)
P 		203
C 239.1
(-1.7)
P 		317.1
(-0.2)
P 		174.7
(-3)
P 		277.2
(-1)
P 		212.5
(-2.3)
P 		479.5
(3)
P 		305
avr 275.5
(-0.9) 		248.1
(-1.9) 		214
(-3) 		270.3
(-1.1) 		311.7
(0.3) 		392.2
(3) 		178
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 83.8
(3)
P 		56.5
(-0)
P 		51.5
(-0.6)
P 		29.9
(-3)
P 		54
B 91.5
(3)
P 		45.5
(-1.2)
P 		50
(-0.8)
P 		25.1
(-3)
P 		66
C 65.5
(1.8)
P 		73.2
(3)
P 		67.5
(2.1)
P 		34.1
(-3)
P 		39
avr 80.3
(3) 		58.4
(0.4) 		56.3
(0.2) 		29.7
(-3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 54.1
(-2.6)
P 		67.2
(-1.2)
P 		50.2
(-3)
P 		50.3
(-3)
P 		106.1
(3)
P 		62.8
(-1.6)
P 		56
B 102.3
(-0.5)
P 		79.3
(-1.8)
P 		57.5
(-3)
P 		88.8
(-1.2)
P 		150.7
(2.3)
P 		163.9
(3)
P 		106
C 88.6
(-0.7)
P 		96.8
(-0.3)
P 		44.5
(-3)
P 		55.8
(-2.4)
P 		68.8
(-1.7)
P 		160.5
(3)
P 		116
avr 81.7
(-0.6) 		81.1
(-0.7) 		50.7
(-3) 		65
(-1.9) 		108.5
(1.4) 		129.1
(3) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184394_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8636
Sequence Type Exemplar sequence
Representative Public ID Y73F8A.24 NCBI
Target Description Y73F8A.24 /REP_DB=WormBase Gene ID /WP=CE25592 /TR=Q9NA35 /GB=CAB70230.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070458(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070458 NCBI Caenorhabditis elegans Y73F8A.24 (Y73F8A.24) mRNA, complete cds. 11/11 None
GENEFINDER00000030910 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15442922:15453149:-1 11/11 None
Y73F8A.24 ENSEMBL cdna:known chromosome:CEL140:IV:15445342:15453149:-1 gene:Y73F8A.24 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030826 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15445439-15453155(-) 96.5 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73F8A.24
Entrez Gene 178431 Entrez gene
SwissProt Q9NA35 EMBL-EBI
WormBase CE32998 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6281 DNA repair inferred from electronic annotation QuickGO AmiGO
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB70230 Hypothetical protein Y73F8A.24 [Caenorhabditis elegans] ref|NP_502859.2| Y73F8A.24 [Caenorhabditis elegans] 0.0
blast CAE68086 Hypothetical protein CBG13719 [Caenorhabditis briggsae] 0.0
blast CAB70230 Hypothetical protein Y73F8A.24 [Caenorhabditis elegans] ref|NP_502859.2| Y73F8A.24 [Caenorhabditis elegans] 1.0E-129
blast CAB60551 Hypothetical protein Y73F8A.23 [Caenorhabditis elegans] ref|NP_502858.1| Y73F8A.23 [Caenorhabditis elegans] 1.0E-118
blast CAE68086 Hypothetical protein CBG13719 [Caenorhabditis briggsae] 1.0E-100
blast AAH64301 Unknown (protein for MGC:77721) [Danio rerio] ref|NP_956221.1| hypothetical protein LOC334839 [Danio rerio] 1.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR004598 EMBL-EBI Transcription factor Tfb2 1.0E-126
Pfam IPR004598 EMBL-EBI Transcription factor Tfb2 1.0E-126
Pfam IPR004598 EMBL-EBI Transcription factor Tfb2 3.3E-112
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000030910 1 611-633
Sequence
Target Sequence 
>C. ELEGANS:184394_S_AT
agtgtacgcgtacacttcgtcactgctacaactcgcgattatcgccctgttcactgaaat
gacttatagattccaagacatgtctgtcggaatgattacacgtgaatccgtacgaggagc
cctgcaacacggaatcaccgccgctcagatcatctcgttcctccgtgccaacgcccaccc
acaatgcatcgccacgtcggggcctgtgaattgtctgccgattacggtagccgatcaaat
tcgcctgtgggaagacgaacgtcgtcgtatgaacctgaaagacgcctacatttactctca
tttcgagtcggaagacgaatttcatggtgtctgtgagtatgctcgacagcagaacatcct
cctgtggtctgataatcagcagaagcttgtgattgttaatgaggatggacatgagctcgt
caggcagtggtacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTGTACGCGTACACTTCGTCACTG 644 55 1059 Antisense
GTCACTGCTACAACTCGCGATTATC 426 465 1077 Antisense
ATTATCGCCCTGTTCACTGAAATGA 677 13 1096 Antisense
ACGTGAATCCGTACGAGGAGCCCTG 397 95 1158 Antisense
CGTCGGGGCCTGTGAATTGTCTGCC 59 245 1253 Antisense
GTCTGCCGATTACGGTAGCCGATCA 498 471 1271 Antisense
TAGCCGATCAAATTCGCCTGTGGGA 653 649 1286 Antisense
GAACGTCGTCGTATGAACCTGAAAG 653 185 1315 Antisense
AAGACGCCTACATTTACTCTCATTT 54 155 1337 Antisense
GACAGCAGAACATCCTCCTGTGGTC 338 369 1403 Antisense
ATGAGCTCGTCAGGCAGTGGTACAA 71 45 1469 Antisense
Sequence Source Affymetrix Proprietary Database