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[184393_at]

Description C33H5.13 /REP_DB=WormBase Gene ID /WP=CE04156 /TR=Q18410 /GB=AAA82273.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 66      6grp_total > 60      4grp_total > 09      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5862
1 2 3 4 range
A 1176
(-3)
P 		2080.5
(-1.9)
P 		1729.5
(-2.3)
P 		6263.1
(3)
P 		5087
B 1171.4
(-3)
P 		1399.6
(-2.8)
P 		1713
(-2.4)
P 		7006.6
(3)
P 		5835
C 1145.1
(-3)
P 		1387
(-2.7)
P 		1649.7
(-2.5)
P 		6814.4
(3)
P 		5669
avr 1164.2
(-3) 		1622.4
(-2.5) 		1697.4
(-2.4) 		6694.7
(3) 		5531

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1093
1 2 3 4 5 6 range
A 1584.9
(-0.7)
P 		1407.4
(-1.8)
P 		1704.3
(0)
P 		2178.3
(3)
P 		1300
(-2.5)
P 		1222
(-3)
P 		956
B 1205.8
(-2)
P 		1486.3
(0.4)
P 		1332.6
(-0.9)
P 		1796.9
(3)
P 		1349.6
(-0.8)
P 		1085.3
(-3)
P 		712
C 1769.8
(1.1)
P 		1280.7
(-2.4)
P 		1604
(-0)
P 		2031.3
(3)
P 		1444.1
(-1.2)
P 		1190.4
(-3)
P 		841
avr 1520.2
(-0.5) 		1391.5
(-1.4) 		1547
(-0.3) 		2002.2
(3) 		1364.6
(-1.6) 		1165.9
(-3) 		836
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1147
1 2 3 4 range
A 428.2
(-3)
P 		451.6
(-2.7)
P 		452.1
(-2.7)
P 		916.8
(3)
P 		489
B 373.5
(-2.9)
P 		345.7
(-3)
P 		396.9
(-2.7)
P 		1493.1
(3)
P 		1147
C 379.1
(-3)
P 		398.8
(-2.8)
P 		575
(-1.5)
P 		1149
(3)
P 		770
avr 393.6
(-3) 		398.7
(-3) 		474.7
(-2.4) 		1186.3
(3) 		793

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 364
1 2 3 4 5 6 range
A 292.2
(-3)
P 		500.6
(1.8)
P 		371.2
(-1.2)
P 		552.5
(3)
P 		392.3
(-0.7)
P 		297.5
(-2.9)
P 		260
B 419.6
(-0.4)
P 		494.7
(1.6)
P 		323.6
(-3)
P 		475.9
(1.1)
P 		548.3
(3)
P 		404.7
(-0.8)
P 		225
C 656
(3)
P 		390.8
(-3)
P 		408.3
(-2.6)
P 		408.5
(-2.6)
P 		467.3
(-1.3)
P 		398.5
(-2.8)
P 		265
avr 455.9
(1.8) 		462
(2.1) 		367.7
(-3) 		479
(3) 		469.3
(2.5) 		366.9
(-3) 		112
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184393_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9361
Sequence Type Exemplar sequence
Representative Public ID C33H5.13 NCBI
Target Description C33H5.13 /REP_DB=WormBase Gene ID /WP=CE04156 /TR=Q18410 /GB=AAA82273.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068887(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068887 NCBI Caenorhabditis elegans C33H5.13 (C33H5.13) mRNA, complete cds. 11/11 None
SNAP00000004482 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7791797:7792175:-1 11/11 None
GENEFINDER00000004505 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7789996:7794634:-1 11/11 None
C33H5.13 ENSEMBL cdna:known chromosome:CEL140:IV:7791797:7792175:-1 gene:C33H5.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7791802-7792181(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C33H5.13
Entrez Gene 183188 Entrez gene
SwissProt Q18410 EMBL-EBI
WormBase CE04156 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82272 Nucleoside triphosphatase protein 1 [Caenorhabditis elegans] ref|NP_501289.1| Nucleoside TriPhosphatase family member (ntp-1) [Caenorhabditis elegans] sp|Q18411|NTP1_CAEEL Putative nucleoside-triphosphatase ntp-1 0.0
blast CAE70887 Hypothetical protein CBG17677 [Caenorhabditis briggsae] 0.0
blast NP_508994 R07E4.4 [Caenorhabditis elegans] gb|AAA80403.2| Abnormal cell migration protein 23 [Caenorhabditis elegans] dbj|BAD02168.1| MIG-23 [Caenorhabditis elegans] sp|Q21815|MIG23_CAEEL Nucleoside-diphosphatase mig-23 (NDPase) (Abnormal cell migration protein 23) 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR000407 EMBL-EBI Nucleoside phosphatase GDA1/CD39 1.0E-126
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 5.8E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000004505 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:184393_AT
ccgccaccttacaatcaagcttataacgcatatccacaacctccacaaggtgtctacaca
gtacaacccggtgttcccatcggacaaggcgttcaaccagcatatgcagtatattatcaa
cagcctcaaactgtcatagttgacgactgccatcaccatcatcatcatcgtgaacgggag
cacgggggaggaggaggcgaaatgtgttgcttagctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGCCACCTTACAATCAAGCTTATA 373 261 34 Antisense
AGCTTATAACGCATATCCACAACCT 539 77 51 Antisense
TCCACAACCTCCACAAGGTGTCTAC 186 589 66 Antisense
GTGTCTACACAGTACAACCCGGTGT 436 485 83 Antisense
TGTTCCCATCGGACAAGGCGTTCAA 673 559 105 Antisense
AAGGCGTTCAACCAGCATATGCAGT 63 163 119 Antisense
GCAGTATATTATCAACAGCCTCAAA 128 311 139 Antisense
TCAACAGCCTCAAACTGTCATAGTT 473 629 150 Antisense
TGTCATAGTTGACGACTGCCATCAC 607 557 165 Antisense
GAACGGGAGCACGGGGGAGGAGGAG 102 347 205 Antisense
GGAGGCGAAATGTGTTGCTTAGCTG 11 515 226 Antisense
Sequence Source Affymetrix Proprietary Database