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[184392_at]

Description F43C11.2 /REP_DB=WormBase Gene ID /WP=CE20784 /TR=Q9U5B4 /GB=AAF16612.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 30.8
(-1.8)
A 		13.1
(-3)
A 		15.5
(-2.8)
A 		101.6
(3)
A 		89
B 15.4
(-1.1)
A 		12.2
(-1.9)
A 		7.7
(-3)
A 		32.3
(3)
A 		25
C 17.1
(-1.6)
A 		15.7
(-1.9)
A 		10.4
(-3)
A 		38.6
(3)
A 		28
avr 21.1
(-1.7) 		13.7
(-2.7) 		11.2
(-3) 		57.5
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 19.4
(-3)
A 		64.8
(3)
A 		48.7
(0.9)
A 		23.2
(-2.5)
A 		27.8
(-1.9)
A 		32.2
(-1.3)
A 		45
B 19.4
(-0.7)
A 		24.3
(2.9)
A 		16.3
(-3)
A 		17.8
(-1.9)
A 		24.5
(3)
A 		19.8
(-0.4)
A 		8
C 12.4
(-1.7)
A 		2.7
(-3)
A 		47.6
(3)
A 		35
(1.3)
A 		9.7
(-2.1)
A 		7.2
(-2.4)
A 		45
avr 17.1
(-3) 		30.6
(1) 		37.5
(3) 		25.3
(-0.6) 		20.7
(-1.9) 		19.7
(-2.2) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 11.2
(1.2)
A 		2.8
(-3)
A 		4
(-2.4)
A 		14.9
(3)
A 		12
B 4.9
(0.6)
A 		3
(-1.6)
A 		1.8
(-3)
A 		6.9
(3)
A 		5
C 5.7
(1.3)
A 		4.5
(-1.1)
A 		3.6
(-3)
A 		6.5
(3)
A 		3
avr 7.3
(1) 		3.4
(-2.7) 		3.1
(-3) 		9.4
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 3.6
(-3)
A 		23.1
(3)
A 		10.6
(-0.8)
A 		5.9
(-2.3)
A 		8.4
(-1.5)
A 		7.8
(-1.7)
A 		20
B 6.7
(-0.3)
A 		8.1
(1.2)
A 		4
(-3)
A 		4.7
(-2.3)
A 		9.9
(3)
A 		7.4
(0.5)
A 		6
C 4.6
(-1)
A 		0.8
(-3)
A 		12.1
(3)
A 		7
(0.3)
A 		3.1
(-1.8)
A 		2.4
(-2.2)
A 		11
avr 5
(-3) 		10.7
(3) 		8.9
(1.1) 		5.9
(-2.1) 		7.1
(-0.8) 		5.9
(-2.1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184392_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5413
Sequence Type Exemplar sequence
Representative Public ID F43C11.2 NCBI
Target Description F43C11.2 /REP_DB=WormBase Gene ID /WP=CE20784 /TR=Q9U5B4 /GB=AAF16612.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061851(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061851 NCBI Caenorhabditis elegans F43C11.2 (F43C11.2) mRNA, complete cds. 11/11 None
SNAP00000012999 ENSEMBL cdna:SNAP chromosome:CEL140:II:2354807:2356726:1 10/11 None
GENEFINDER00000013017 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2354789:2355952:1 10/11 None
F43C11.2 ENSEMBL cdna:known chromosome:CEL140:II:2354777:2355744:1 gene:F43C11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2354775-2355743(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F43C11.2
Entrez Gene 185696 Entrez gene
SwissProt Q9U5B4 EMBL-EBI
WormBase CE20784 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF16612 Hypothetical protein F43C11.2 [Caenorhabditis elegans] ref|NP_494252.1| F43C11.2 [Caenorhabditis elegans] 7.0E-99
blast AAF16612 Hypothetical protein F43C11.2 [Caenorhabditis elegans] ref|NP_494252.1| F43C11.2 [Caenorhabditis elegans] 4.0E-91
blast AAF16612 Hypothetical protein F43C11.2 [Caenorhabditis elegans] ref|NP_494252.1| F43C11.2 [Caenorhabditis elegans] 6.0E-88
blast AAF16613 Hypothetical protein F43C11.1 [Caenorhabditis elegans] ref|NP_494253.1| F43C11.1 [Caenorhabditis elegans] 5.0E-52
blast AAF16613 Hypothetical protein F43C11.1 [Caenorhabditis elegans] ref|NP_494253.1| F43C11.1 [Caenorhabditis elegans] 3.0E-46
blast AAF16613 Hypothetical protein F43C11.1 [Caenorhabditis elegans] ref|NP_494253.1| F43C11.1 [Caenorhabditis elegans] 5.0E-44
blast AAF16611 Hypothetical protein F43C11.3 [Caenorhabditis elegans] ref|NP_494251.1| F43C11.3 [Caenorhabditis elegans] 2.0E-32
blast AAC26270 Hypothetical protein F16G10.2 [Caenorhabditis elegans] ref|NP_494259.1| F16G10.2 [Caenorhabditis elegans] 2.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 3.5E-24
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 7.6E-13
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 8.8E-16
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 6.3E-30
Sequence
Target Sequence 
>C. ELEGANS:184392_AT
aatgtacttttccatgttcatgactctgtgtttatttggccacgtggaagccaaatgtct
tgccaatactccaccacaagagacaacttccagttctgctgggggctgtatggaaaccta
cactccagagtgtggaaatttgacatcactttttgactatgagtttctaacccttctaac
ctctgagcaagatgggtgtactgtgttctcatgtcctcggggattaagaccgttggttca
cgcatcgttcgaaaacaccgaattgccaaaacctactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGTACTTTTCCATGTTCATGACT 30 165 24 Antisense
GACTCTGTGTTTATTTGGCCACGTG 557 369 45 Antisense
GCCAAATGTCTTGCCAATACTCCAC 269 279 73 Antisense
ACTTCCAGTTCTGCTGGGGGCTGTA 137 105 109 Antisense
GGGGCTGTATGGAAACCTACACTCC 635 495 125 Antisense
TGACTATGAGTTTCTAACCCTTCTA 650 569 177 Antisense
TAACCCTTCTAACCTCTGAGCAAGA 266 639 191 Antisense
ATGGGTGTACTGTGTTCTCATGTCC 447 49 215 Antisense
GTTCTCATGTCCTCGGGGATTAAGA 682 441 228 Antisense
TAAGACCGTTGGTTCACGCATCGTT 610 637 248 Antisense
AACACCGAATTGCCAAAACCTACTG 479 129 277 Antisense
Sequence Source Affymetrix Proprietary Database