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[184391_at]

Description ZK488.10 /REP_DB=WormBase Gene ID /WP=CE15369 /TR=O17024 /GB=AAB69957.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 44      6grp_cgc > 71      6grp_cgc_sub > 03      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 81.6
(-1.2)
P 		113.1
(3)
P 		83.7
(-0.9)
A 		68.3
(-3)
A 		45
B 98.9
(3)
P 		76.8
(-1.1)
P 		66.5
(-3)
P 		75.3
(-1.4)
A 		32
C 77.3
(-0.5)
P 		107
(3)
P 		63.9
(-2.1)
P 		56
(-3)
A 		51
avr 85.9
(0.6) 		99
(3) 		71.4
(-2.1) 		66.5
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 72.6
(2.7)
A 		59.5
(1.5)
P 		76.4
(3)
P 		69.5
(2.4)
A 		6.8
(-3)
A 		10
(-2.7)
A 		70
B 52.4
(-0.2)
A 		84.7
(2.6)
P 		88.8
(3)
P 		20.2
(-3)
A 		50.8
(-0.3)
A 		38.1
(-1.4)
A 		69
C 66.1
(2.9)
M 		48.2
(0.6)
P 		20.8
(-3)
A 		66.6
(3)
A 		55.5
(1.5)
P 		66.1
(2.9)
P 		46
avr 63.7
(2.9) 		64.1
(3) 		62
(2.5) 		52.1
(0.3) 		37.7
(-3) 		38.1
(-2.9) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 29.7
(3)
P 		24.6
(1.4)
P 		21.9
(0.6)
A 		10
(-3)
A 		20
B 31.5
(3)
P 		19
(-1.7)
P 		15.4
(-3)
P 		16
(-2.8)
A 		16
C 25.6
(1.5)
P 		30.8
(3)
P 		22.3
(0.6)
P 		9.4
(-3)
A 		21
avr 28.9
(3) 		24.8
(1.6) 		19.9
(-0.2) 		11.8
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 13.4
(0.5)
A 		21.2
(3)
P 		16.6
(1.6)
P 		17.6
(1.9)
A 		2.1
(-3)
A 		2.4
(-2.9)
A 		19
B 18.2
(0.4)
A 		28.2
(3)
P 		21.6
(1.3)
P 		5.4
(-3)
A 		20.7
(1)
A 		14.2
(-0.7)
A 		23
C 24.5
(3)
M 		14.7
(-0.1)
P 		5.3
(-3)
A 		13.4
(-0.5)
A 		18
(1)
P 		22.1
(2.3)
P 		19
avr 18.7
(1.3) 		21.4
(3) 		14.5
(-1.5) 		12.1
(-3) 		13.6
(-2) 		12.9
(-2.5) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184391_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15309
Sequence Type Exemplar sequence
Representative Public ID ZK488.10 NCBI
Target Description ZK488.10 /REP_DB=WormBase Gene ID /WP=CE15369 /TR=O17024 /GB=AAB69957.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070861(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070861 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-97) (pqn-97) mRNA, complete cds. 11/11 None
SNAP00000016988 ENSEMBL cdna:SNAP chromosome:CEL140:V:609031:609522:-1 11/11 None
GENEFINDER00000016996 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:604567:609555:-1 11/11 None
ZK488.10 ENSEMBL cdna:known chromosome:CEL140:V:609031:609555:-1 gene:ZK488.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:609030-609555(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-97
Ensembl ZK488.10
Entrez Gene 191335 Entrez gene
SwissProt O17024 EMBL-EBI
WormBase CE15369 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69956 Serpentine receptor, class w protein 109 [Caenorhabditis elegans] ref|NP_503261.2| Serpentine Receptor, class W family member (srw-109) [Caenorhabditis elegans] 1.0E-82
blast T32234 hypothetical protein ZK488.8 - Caenorhabditis elegans 2.0E-62
blast AAB69957 Prion-like-(q/n-rich)-domain-bearing protein protein 97 [Caenorhabditis elegans] ref|NP_503262.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-97) [Caenorhabditis elegans] 3.0E-51
blast D88930 protein R11G11.10 [imported] - Caenorhabditis elegans 9.0E-50
blast AAB69954 Prion-like-(q/n-rich)-domain-bearing protein protein 98 [Caenorhabditis elegans] ref|NP_503259.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-98) [Caenorhabditis elegans] 7.0E-47
blast AAB69957 Prion-like-(q/n-rich)-domain-bearing protein protein 97 [Caenorhabditis elegans] ref|NP_503262.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-97) [Caenorhabditis elegans] 3.0E-45
blast AAB69954 Prion-like-(q/n-rich)-domain-bearing protein protein 98 [Caenorhabditis elegans] ref|NP_503259.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-98) [Caenorhabditis elegans] 2.0E-43
blast CAE74709 Hypothetical protein CBG22524 [Caenorhabditis briggsae] 2.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR003677 EMBL-EBI Protein of unknown function, DUF 148 5.0E-63
Pfam IPR003677 EMBL-EBI Protein of unknown function, DUF 148 5.0E-63
Pfam IPR003677 EMBL-EBI Protein of unknown function, DUF 148 5.3E-62
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503262.1 1 15-34
ZK488.10 1 15-34
SNAP00000016988 1 4-23
GENEFINDER00000016996 8 13-35,161-183,190-212,260-282,315-337,352-374,470-492,507-529
Sequence
Target Sequence 
>C. ELEGANS:184391_AT
gttctcactgctcttgtagctattgtttctgctggctccagttggccaatgttcttgaga
gatcagccaagaaatattcaacaatcttactacacaattgcaagtaattcctcattgact
cagaatcagaaggatcaacagctccagcagtgggcgcagactaataatctatccagccaa
tactccgactacacccaacaacgggaccaacaggagcagcaaatgagtcaaaacacgtct
caaataatttctcagctgtcttcagttcaaaaccaactcgaatcaattttgaacaacgac
aatcaaaccggggagcagcagcaacaagctattcagactctcacaaatcaatatccccaa
gaagttccagttctgttcttcattcgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTCACTGCTCTTGTAGCTATTG 264 443 61 Antisense
GCAAGTAATTCCTCATTGACTCAGA 229 321 160 Antisense
CTCCAGCAGTGGGCGCAGACTAATA 89 237 202 Antisense
AATAATCTATCCAGCCAATACTCCG 9 173 223 Antisense
AACAACGGGACCAACAGGAGCAGCA 516 131 257 Antisense
AATAATTTCTCAGCTGTCTTCAGTT 333 171 303 Antisense
ATCAAACCGGGGAGCAGCAGCAACA 393 27 362 Antisense
GCAACAAGCTATTCAGACTCTCACA 466 319 381 Antisense
GACTCTCACAAATCAATATCCCCAA 323 373 396 Antisense
ATCAATATCCCCAAGAAGTTCCAGT 77 27 407 Antisense
TTCCAGTTCTGTTCTTCATTCGAAA 590 699 425 Antisense
Sequence Source Affymetrix Proprietary Database