[Home] | [Total List]

[184390_at]

Description C04E12.9 /REP_DB=WormBase Gene ID /WP=CE16822 /TR=O76681 /GB=AAC27086.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 04      6grp_cgc > 74      6grp_cgc_sub > 02_03_04_05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 10.2
(-2.2)
A 		5.4
(-2.8)
A 		3.9
(-3)
A 		49.6
(3)
A 		46
B 3.1
(-2.7)
A 		5.9
(-2)
A 		1.9
(-3)
A 		26
(3)
A 		24
C 23.9
(3)
A 		2.2
(-3)
A 		4
(-2.5)
A 		17
(1.1)
A 		22
avr 12.4
(-1) 		4.5
(-2.7) 		3.3
(-3) 		30.9
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 1.6
(-2.4)
A 		1.1
(-3)
A 		6.1
(3)
A 		1.3
(-2.8)
A 		2.9
(-0.8)
A 		4.3
(0.8)
A 		5
B 1.7
(-2.3)
A 		4.6
(-0.1)
A 		3.8
(-0.7)
A 		1.5
(-2.5)
A 		8.7
(3)
A 		0.8
(-3)
A 		8
C 3.3
(-2.6)
A 		21.5
(1.3)
A 		2.1
(-2.8)
A 		29.7
(3)
A 		8.4
(-1.5)
A 		1.2
(-3)
A 		29
avr 2.2
(-2.9) 		9.1
(1.8) 		4
(-1.7) 		10.8
(3) 		6.7
(0.2) 		2.1
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 3.7
(-0.4)
A 		1.2
(-2.8)
A 		1
(-3)
A 		7.3
(3)
A 		6
B 1
(-2.3)
A 		1.5
(-1.7)
A 		0.4
(-3)
A 		5.5
(3)
A 		5
C 7.9
(3)
A 		0.6
(-3)
A 		1.4
(-2.3)
A 		2.9
(-1.1)
A 		7
avr 4.2
(1.6) 		1.1
(-2.7) 		0.9
(-3) 		5.2
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.4
(-2.4)
A 		1.3
(3)
A 		0.3
(-3)
A 		0.9
(0.6)
A 		1
(1.2)
A 		1
B 0.6
(-2.4)
A 		1.5
(-0.8)
A 		0.9
(-1.9)
A 		0.4
(-2.8)
A 		3.5
(3)
A 		0.3
(-3)
A 		3
C 1.2
(-2.2)
A 		6.5
(3)
A 		0.5
(-2.9)
A 		6
(2.5)
A 		2.7
(-0.7)
A 		0.4
(-3)
A 		6
avr 0.7
(-2.7) 		2.8
(3) 		0.9
(-2.2) 		2.2
(1.4) 		2.4
(1.9) 		0.6
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184390_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15802
Sequence Type Exemplar sequence
Representative Public ID C04E12.9 NCBI
Target Description C04E12.9 /REP_DB=WormBase Gene ID /WP=CE16822 /TR=O76681 /GB=AAC27086.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071539, NM_071512
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000029758 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3370768:3376899:-1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071539 6/11 Cross Hyb Matching Probes None
C04E12.9 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3374383-3376899(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC27094 Serpentine receptor, class x protein 121 [Caenorhabditis elegans] ref|NP_503939.1| Serpentine Receptor, class X family member (srx-121) [Caenorhabditis elegans] 0.0
blast AAF99934 Serpentine receptor, class x protein 122 [Caenorhabditis elegans] ref|NP_503912.2| Serpentine Receptor, class X family member (srx-122) [Caenorhabditis elegans] 1.0E-158
blast CAB04431 Hypothetical protein F49C5.2 [Caenorhabditis elegans] ref|NP_496677.2| Serpentine Receptor, class X family member (srx-120) [Caenorhabditis elegans] 1.0E-151
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 3.7E-90
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 7.1
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000029758 13 15-36,48-70,85-107,181-203,235-254,304-323,376-398,405-427,442-464,485-507,540-562,583-605,615-637
Sequence
Target Sequence 
>C. ELEGANS:184390_AT
accgatacgctaatattgcggctggagtgcgcagttagtactgatgccatttacacacca
attatgtttcataattatcgccatttatgtccttctataataattttgatattagctatt
ggcttggcaatgctcgaaaatctaatattataccttttttgtactttaaatatatccgca
attcctcgagactgtggagttttgcgttgttcacttgacaattgttatttcaactattgg
acaactgatagatcggtgttatttgctcttaactttgcattttctggtttattatctaca
agactgcttctcttcaataaaaagcataatcataatgccggcgaagagcatacaaagata
aatcatattgcattgatcgacgctgcgaacgtattcctatgtgattttctgccaactttc
tccaactatgttaatgactatccatttttcagtttcaaggtcaaagttttgacttctttc
ggttttataactctccttttttcagaacataggaccttatgtttatatcataaagctggt
tggcagtgctgtagaatcgtattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCGATACGCTAATATTGCGGCTGG 381 87 460 Antisense
GCGGCTGGAGTGCGCAGTTAGTACT 645 291 477 Antisense
TAGTACTGATGCCATTTACACACCA 367 653 495 Antisense
AATTATCGCCATTTATGTCCTTCTA 661 175 532 Antisense
TAGCTATTGGCTTGGCAATGCTCGA 115 645 572 Antisense
ATTGCATTGATCGACGCTGCGAACG 598 5 826 Antisense
CGCTGCGAACGTATTCCTATGTGAT 685 253 840 Antisense
TTCCTATGTGATTTTCTGCCAACTT 201 701 853 Antisense
TGACTTCTTTCGGTTTTATAACTCT 379 571 929 Antisense
ATAACTCTCCTTTTTTCAGAACATA 397 25 946 Antisense
TTGGCAGTGCTGTAGAATCGTATTT 318 653 999 Antisense
Sequence Source Affymetrix Proprietary Database