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[184389_at]

Description Y23H5A.2 /REP_DB=WormBase Gene ID /WP=CE18358 /TR=O76617 /GB=AAC64628.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 15      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 79.1
(0.5)
A 		94.3
(1.2)
A 		11.4
(-3)
A 		129
(3)
A 		118
B 118.4
(3)
A 		11.3
(-3)
A 		77.4
(0.7)
A 		100.3
(2)
A 		107
C 91.3
(3)
A 		10.2
(-3)
A 		67.8
(1.3)
A 		22.2
(-2.1)
A 		81
avr 96.3
(3) 		38.6
(-3) 		52.2
(-1.6) 		83.8
(1.7) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 236
1 2 3 4 5 6 range
A 54.5
(-2)
A 		21.9
(-2.9)
A 		19.3
(-3)
A 		62.9
(-1.8)
A 		132.8
(0.2)
A 		234.7
(3)
A 		215
B 121.6
(-0.4)
A 		20
(-3)
A 		53.5
(-2.1)
A 		92.1
(-1.2)
A 		138.2
(0)
A 		255.6
(3)
P 		236
C 55
(-2.1)
A 		35
(-2.9)
A 		32.9
(-3)
A 		69.2
(-1.5)
A 		182.2
(3)
A 		106.2
(-0.1)
A 		149
avr 77
(-1.2) 		25.6
(-3) 		35.2
(-2.7) 		74.7
(-1.3) 		151.1
(1.3) 		198.8
(3) 		173
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 28.8
(3)
A 		20.5
(1.1)
A 		3
(-3)
A 		18.9
(0.7)
A 		26
B 37.8
(3)
A 		2.8
(-3)
A 		17.9
(-0.4)
A 		21.4
(0.2)
A 		35
C 30.2
(3)
A 		2.9
(-3)
A 		23.6
(1.5)
A 		3.7
(-2.8)
A 		27
avr 32.3
(3) 		8.7
(-3) 		14.8
(-1.4) 		14.7
(-1.5) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 10
(-2.3)
A 		7.8
(-2.6)
A 		4.2
(-3)
A 		15.9
(-1.7)
A 		40.1
(1.1)
A 		57.1
(3)
A 		53
B 42.3
(-0.6)
A 		6.7
(-3)
A 		13
(-2.6)
A 		24.4
(-1.8)
A 		56.1
(0.3)
A 		95.3
(3)
P 		89
C 20.4
(-1.6)
A 		10.7
(-2.7)
A 		8.4
(-3)
A 		13.9
(-2.3)
A 		59
(3)
A 		35.5
(0.2)
A 		51
avr 24.2
(-1.3) 		8.4
(-3) 		8.5
(-3) 		18.1
(-1.9) 		51.7
(1.8) 		62.6
(3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184389_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.166
Sequence Type Exemplar sequence
Representative Public ID Y23H5A.2 NCBI
Target Description Y23H5A.2 /REP_DB=WormBase Gene ID /WP=CE18358 /TR=O76617 /GB=AAC64628.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058611(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058611 NCBI Caenorhabditis elegans Y23H5A.2 (Y23H5A.2) mRNA, complete cds. 11/11 None
SNAP00000016937 ENSEMBL cdna:SNAP chromosome:CEL140:I:2621958:2623117:1 11/11 None
Y23H5A.2 ENSEMBL cdna:known chromosome:CEL140:I:2621958:2623269:1 gene:Y23H5A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000016945 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2621957-2623117(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y23H5A.2
Entrez Gene 171820 Entrez gene
SwissProt O76617 EMBL-EBI
WormBase CE18358 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491012 Y23H5A.2 [Caenorhabditis elegans] gb|AAC64628.1| Hypothetical protein Y23H5A.2 [Caenorhabditis elegans] 1.0E-96
blast CAE69001 Hypothetical protein CBG14990 [Caenorhabditis briggsae] 1.0E-37
Sequence
Target Sequence 
>C. ELEGANS:184389_AT
tggaagaaggcagctcctcacagccatccgacgactatgagccgagatataaaatttcac
gaccaaatcaacaaatgcgacttcctataattcggcctaaaatcccgccgaaatcctcag
gcccaccggttcgcctgatcacctccgccactccacaaccgatagcgccgagcacatcga
acccgcggccgctgatctcactgctcgatcggacagagtttcgcgatcggaatcgaccgg
cgctggtgccgacgagaatgatggcaaaaccgaagaagtgctattacacagagatggccg
atattcgaaaggaattcggaatacccgaagcgctggacactgtgaagccgaacacgatga
gcggcgttgcactggcgtcaaagctcaacctcctacaacgtctacgcggcgagaacaaat
tcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAAGAAGGCAGCTCCTCACAGCC 212 547 14 Antisense
CTCACAGCCATCCGACGACTATGAG 315 227 30 Antisense
ATGCGACTTCCTATAATTCGGCCTA 396 41 88 Antisense
TAAAATCCCGCCGAAATCCTCAGGC 29 641 111 Antisense
ATCTCACTGCTCGATCGGACAGAGT 579 31 208 Antisense
AGTTTCGCGATCGGAATCGACCGGC 510 61 230 Antisense
GCGCTGGTGCCGACGAGAATGATGG 677 285 253 Antisense
TCGGAATACCCGAAGCGCTGGACAC 585 605 329 Antisense
GAACACGATGAGCGGCGTTGCACTG 565 351 363 Antisense
GTTGCACTGGCGTCAAAGCTCAACC 319 439 379 Antisense
GTCTACGCGGCGAGAACAAATTCCT 707 467 413 Antisense
Sequence Source Affymetrix Proprietary Database