[Home] | [Total List]

[184388_at]

Description Y46H3A.4 /REP_DB=WormBase Gene ID /WP=CE24307 /TR=Q9N4W7 /GB=AAF60618.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 04      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 214
1 2 3 4 range
A 78.7
(-1.1)
A 		15.2
(-3)
A 		21.5
(-2.8)
A 		219.6
(3)
P 		204
B 38.8
(-2.4)
A 		17.5
(-3)
A 		23.1
(-2.8)
A 		229.4
(3)
P 		212
C 52.7
(-2)
A 		20.4
(-2.9)
A 		16.1
(-3)
A 		228.6
(3)
P 		213
avr 56.7
(-1.9) 		17.7
(-3) 		20.2
(-2.9) 		225.9
(3) 		208

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 26.8
(-2)
A 		21.8
(-2.4)
A 		47.8
(-0.3)
A 		14.1
(-3)
A 		41.7
(-0.8)
A 		89.9
(3)
A 		76
B 31.9
(-2.5)
A 		34.1
(-2.5)
A 		58.7
(-1.4)
A 		55.3
(-1.5)
A 		21.2
(-3)
A 		162.2
(3)
M 		141
C 113
(3)
A 		62.7
(-0.4)
A 		23.1
(-3)
A 		41.7
(-1.8)
A 		29.8
(-2.6)
A 		84.1
(1.1)
A 		90
avr 57.2
(-1.1) 		39.5
(-2.4) 		43.2
(-2.1) 		37
(-2.5) 		30.9
(-3) 		112.1
(3) 		81
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 28.7
(2.3)
A 		3.3
(-3)
A 		5.6
(-2.5)
A 		32.1
(3)
P 		29
B 12.4
(-1.9)
A 		4.3
(-3)
A 		5.4
(-2.9)
A 		48.9
(3)
P 		45
C 17.4
(-0.8)
A 		5.9
(-2.9)
A 		5.6
(-3)
A 		38.5
(3)
P 		33
avr 19.5
(-0.5) 		4.5
(-3) 		5.5
(-2.8) 		39.8
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 4.9
(-2.6)
A 		7.7
(-1.7)
A 		10.4
(-0.8)
A 		3.6
(-3)
A 		12.6
(-0)
A 		21.9
(3)
A 		18
B 11.1
(-2.7)
A 		11.3
(-2.7)
A 		14.3
(-2.3)
A 		14.6
(-2.3)
A 		8.6
(-3)
A 		60.5
(3)
M 		52
C 41.9
(3)
A 		19.1
(-0.8)
A 		5.9
(-3)
A 		8.4
(-2.6)
A 		9.6
(-2.4)
A 		28.1
(0.7)
A 		36
avr 19.3
(-0.8) 		12.7
(-2.2) 		10.2
(-2.7) 		8.9
(-3) 		10.3
(-2.7) 		36.8
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184388_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15030
Sequence Type Exemplar sequence
Representative Public ID Y46H3A.4 NCBI
Target Description Y46H3A.4 /REP_DB=WormBase Gene ID /WP=CE24307 /TR=Q9N4W7 /GB=AAF60618.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071109(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071109 NCBI Caenorhabditis elegans Y46H3A.4 (Y46H3A.4) mRNA, complete cds. 11/11 None
Y46H3A.4 ENSEMBL cdna:known chromosome:CEL140:V:1809478:1812349:-1 gene:Y46H3A.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020850 3/11 Cross Hyb Matching Probes None
SNAP00000020852 2/11 Cross Hyb Matching Probes None
GENEFINDER00000020860 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1809477-1812349(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46H3A.4
Entrez Gene 189962 Entrez gene
SwissProt Q9N4W7 EMBL-EBI
WormBase CE24307 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6629 lipid metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4806 triacylglycerol lipase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503510 Y46H3A.4 [Caenorhabditis elegans] gb|AAF60618.1| Hypothetical protein Y46H3A.4 [Caenorhabditis elegans] 0.0
blast CAE74180 Hypothetical protein CBG21853 [Caenorhabditis briggsae] 6.0E-58
blast CAE66417 Hypothetical protein CBG11685 [Caenorhabditis briggsae] 2.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR002921 EMBL-EBI Lipase, class 3 7.1E-55
Sequence
Target Sequence 
>C. ELEGANS:184388_AT
gatttggtaccctgatggcatggcacggggagcccggttcgaaattggtactcgaccaga
tacgactgtaggccgaagtgtatttccgttcaatttcgacgatcataagacatatttcaa
tgtggccatcgatgactggtggaaaaatggatttaaattttgccacttggccgcagacaa
aaagttcggccacccaattttcatttgggggtcatgttcaaatacacctacaaaatatga
aaactttctggtttttctttcttggtgtttttattaccttcttctgactcatcccccatt
gttaggattttgtacaaacacgaaaatgtgtacttatacgcaacatttcacatatttcgc
aggatttttcccaaacttccagtcatgtctgcctactacgatccatatggaaatacggtg
tgcaccacacaaccttatccacagccacctccgccggttattgtatgccaaccacaacca
gatcactgccatcgtcatgagccatcatgttgtgagagctgtctggcatgctgtgtatgc
tgccagtgcctggccttgttgtgctcctgctcggaaggtggttgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTGGTACCCTGATGGCATGGCA 69 427 480 Antisense
GTAGGCCGAAGTGTATTTCCGTTCA 328 419 547 Antisense
AATTTTGCCACTTGGCCGCAGACAA 496 175 635 Antisense
TTTTATTACCTTCTTCTGACTCATC 546 675 748 Antisense
GACTCATCCCCCATTGTTAGGATTT 645 373 765 Antisense
CGCAACATTTCACATATTTCGCAGG 312 253 818 Antisense
GGATTTTTCCCAAACTTCCAGTCAT 416 509 841 Antisense
CTCCGCCGGTTATTGTATGCCAACC 294 233 928 Antisense
ACTGCCATCGTCATGAGCCATCATG 700 97 964 Antisense
GAGAGCTGTCTGGCATGCTGTGTAT 196 395 993 Antisense
TGCTCCTGCTCGGAAGGTGGTTGCT 34 583 1041 Antisense
Sequence Source Affymetrix Proprietary Database