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[184386_at]

Description C41D11.6 /REP_DB=WormBase Gene ID /WP=CE08663 /TR=O01978 /GB=AAC48140.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 17      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 7.7
(-3)
A 		7.7
(-3)
A 		27.2
(0.2)
A 		43.9
(3)
A 		36
B 8.2
(-2)
A 		39.3
(3)
A 		2.1
(-3)
A 		26.7
(1)
A 		37
C 10.8
(-3)
A 		19.2
(-1.2)
A 		21.1
(-0.8)
A 		38.6
(3)
A 		28
avr 8.9
(-3) 		22.1
(-0.1) 		16.8
(-1.3) 		36.4
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 14
(0.2)
A 		14
(0.2)
A 		4.5
(-3)
A 		9.6
(-1.3)
A 		9.5
(-1.3)
A 		22.2
(3)
A 		18
B 23.1
(1)
A 		4.6
(-3)
A 		23.9
(1.2)
A 		17.2
(-0.3)
A 		7.9
(-2.3)
A 		32.2
(3)
A 		28
C 6.9
(0.3)
A 		7.4
(0.7)
A 		10.6
(3)
A 		9.8
(2.4)
A 		2.3
(-3)
A 		2.7
(-2.7)
A 		8
avr 14.7
(0.9) 		8.7
(-2) 		13
(0.1) 		12.2
(-0.3) 		6.6
(-3) 		19
(3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.8
(-1.8)
A 		1.7
(-3)
A 		7.1
(3)
A 		6.4
(2.2)
A 		5
B 2.6
(-1.6)
A 		9.7
(3)
A 		0.5
(-3)
A 		5.7
(0.4)
A 		9
C 3.6
(-3)
A 		5.5
(-0)
A 		7.4
(3)
A 		6.5
(1.6)
A 		4
avr 3
(-3) 		5.6
(1.9) 		5
(0.8) 		6.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 2.6
(-0.8)
A 		5
(2.5)
A 		1
(-3)
A 		2.4
(-1.1)
A 		2.9
(-0.4)
A 		5.4
(3)
A 		4
B 8
(0.7)
A 		1.5
(-3)
A 		5.8
(-0.5)
A 		4.6
(-1.2)
A 		3.2
(-2)
A 		12
(3)
A 		11
C 2.5
(2.4)
A 		2.2
(1.5)
A 		2.7
(3)
A 		2
(0.9)
A 		0.7
(-3)
A 		0.9
(-2.4)
A 		2
avr 4.4
(0.3) 		2.9
(-2.1) 		3.2
(-1.6) 		3
(-1.9) 		2.3
(-3) 		6.1
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184386_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2395
Sequence Type Exemplar sequence
Representative Public ID C41D11.6 NCBI
Target Description C41D11.6 /REP_DB=WormBase Gene ID /WP=CE08663 /TR=O01978 /GB=AAC48140.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058975(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058975 NCBI Caenorhabditis elegans C41D11.6 (C41D11.6) mRNA, complete cds. 11/11 None
GENEFINDER00000002073 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4458974:4462705:-1 11/11 None
SNAP00000002072 ENSEMBL cdna:SNAP chromosome:CEL140:I:4460147:4462705:-1 11/11 None
C41D11.6 ENSEMBL cdna:known chromosome:CEL140:I:4460147:4462705:-1 gene:C41D11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4460146-4462705(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C41D11.6
Entrez Gene 183377 Entrez gene
SwissProt O01978 EMBL-EBI
WormBase CE08663 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48140 Hypothetical protein C41D11.6 [Caenorhabditis elegans] ref|NP_491376.1| C41D11.6 [Caenorhabditis elegans] 0.0
blast CAE56861 Hypothetical protein CBG24691 [Caenorhabditis briggsae] 9.0E-40
blast CAE56861 Hypothetical protein CBG24691 [Caenorhabditis briggsae] 7.0E-38
blast CAB61079 Hypothetical protein Y53F4B.10 [Caenorhabditis elegans] ref|NP_497094.1| Y53F4B.10 [Caenorhabditis elegans] 9.0E-35
Sequence
Target Sequence 
>C. ELEGANS:184386_AT
atgatgcgattcgttcgttggcacccagaggaagagtgaaggttgttcgagccatgtcag
cgcgtttgagagatgaggcgaagccggaagtgctcacagaggatgatttcccgattctat
ggagagaagtgttcacggaggtcgtgcagtcagtcaacagaccgaatgtcagaggaaccc
atcctgcaattattgacgccgcgagacatttgaacgctcatggacttcttccgtcgccga
tgttgaacaacgagattagagttcgatgcaaagcaccatacaaaacggagcccccagcac
ataccatctggacggcgttgatgaagattcatgagacagcaatcatcatcgggactacag
catcgattcacacagctctcaatgatattggattcgccagcaaagcgaatgagattggat
tggtgatgctcgacgaagcttcacaaattccaatgatcaagatcggaggactcgctacac
atttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGATGCGATTCGTTCGTTGGCACC 436 45 2054 Antisense
GAAGGTTGTTCGAGCCATGTCAGCG 66 335 2091 Antisense
GAGGTCGTGCAGTCAGTCAACAGAC 209 403 2191 Antisense
GGAACCCATCCTGCAATTATTGACG 216 529 2227 Antisense
GACGCCGCGAGACATTTGAACGCTC 346 381 2248 Antisense
ATTTGAACGCTCATGGACTTCTTCC 671 17 2261 Antisense
TTCTTCCGTCGCCGATGTTGAACAA 606 689 2279 Antisense
CAGCACATACCATCTGGACGGCGTT 299 203 2348 Antisense
GACAGCAATCATCATCGGGACTACA 64 369 2388 Antisense
ACAGCATCGATTCACACAGCTCTCA 430 109 2410 Antisense
ATCGGAGGACTCGCTACACATTTCC 80 35 2515 Antisense
Sequence Source Affymetrix Proprietary Database