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[184385_at]

Description C16C8.17 /REP_DB=WormBase Gene ID /WP=CE08228 /TR=P91058 /GB=AAB37861.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 49      4grp_total > 03      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 11.1
(-2.3)
A 		9.5
(-2.5)
A 		5.7
(-3)
A 		52.3
(3)
A 		47
B 4.8
(-0.5)
A 		2.5
(-3)
A 		4.5
(-0.9)
A 		8.1
(3)
A 		6
C 4.3
(-2.2)
A 		6.8
(-1.2)
A 		2
(-3)
A 		18.3
(3)
A 		16
avr 6.7
(-2.3) 		6.3
(-2.4) 		4.1
(-3) 		26.2
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 17.7
(1.4)
A 		2.8
(-2.8)
A 		2.1
(-3)
A 		8.2
(-1.3)
A 		6.6
(-1.7)
A 		23.2
(3)
A 		21
B 11.9
(3)
A 		4.3
(-2.6)
A 		6.2
(-1.2)
A 		4.9
(-2.1)
A 		6.7
(-0.8)
A 		3.7
(-3)
A 		8
C 4.1
(-2.3)
A 		14.1
(3)
A 		4.6
(-2)
A 		5.9
(-1.3)
A 		6
(-1.3)
A 		2.7
(-3)
A 		11
avr 11.2
(3) 		7.1
(-0.6) 		4.3
(-3) 		6.3
(-1.3) 		6.4
(-1.2) 		9.9
(1.9) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 4
(-0.6)
A 		2.1
(-2.4)
A 		1.5
(-3)
A 		7.7
(3)
A 		6
B 1.5
(1.9)
A 		0.6
(-3)
A 		1
(-0.8)
A 		1.7
(3)
A 		1
C 1.4
(-1.3)
A 		2
(0.3)
A 		0.7
(-3)
A 		3.1
(3)
A 		2
avr 2.3
(-0.7) 		1.6
(-2) 		1.1
(-3) 		4.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 3.3
(0.3)
A 		1
(-2.4)
A 		0.5
(-3)
A 		2.1
(-1.1)
A 		2
(-1.2)
A 		5.6
(3)
A 		5
B 4.1
(3)
A 		1.4
(-2.8)
A 		1.5
(-2.6)
A 		1.3
(-3)
A 		2.7
(0)
A 		1.4
(-2.8)
A 		3
C 1.5
(-1.9)
A 		4.3
(3)
A 		1.2
(-2.5)
A 		1.2
(-2.5)
A 		1.9
(-1.2)
A 		0.9
(-3)
A 		3
avr 3
(3) 		2.2
(0.5) 		1.1
(-3) 		1.5
(-1.7) 		2.2
(0.5) 		2.6
(1.7) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184385_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5473
Sequence Type Exemplar sequence
Representative Public ID C16C8.17 NCBI
Target Description C16C8.17 /REP_DB=WormBase Gene ID /WP=CE08228 /TR=P91058 /GB=AAB37861.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062140(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062140 NCBI Caenorhabditis elegans C16C8.17 (C16C8.17) mRNA, complete cds. 11/11 A 
SNAP00000014775 ENSEMBL cdna:SNAP chromosome:CEL140:II:3441707:3446556:1 11/11 None
GENEFINDER00000014792 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3441707:3442440:1 11/11 None
C16C8.17 ENSEMBL cdna:known chromosome:CEL140:II:3440822:3442440:1 gene:C16C8.17 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3440820-3442439(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C8.17
Entrez Gene 173687 Entrez gene
SwissProt P91058 EMBL-EBI
WormBase CE08228 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37861 Hypothetical protein C16C8.17 [Caenorhabditis elegans] ref|NP_494541.1| C16C8.17 [Caenorhabditis elegans] 1.0E-161
blast AAB37858 Hypothetical protein C16C8.16 [Caenorhabditis elegans] ref|NP_494544.1| C16C8.16 [Caenorhabditis elegans] 1.0E-115
blast AAB37861 Hypothetical protein C16C8.17 [Caenorhabditis elegans] ref|NP_494541.1| C16C8.17 [Caenorhabditis elegans] 2.0E-92
blast AAB37861 Hypothetical protein C16C8.17 [Caenorhabditis elegans] ref|NP_494541.1| C16C8.17 [Caenorhabditis elegans] 4.0E-83
blast AAB37856 Hypothetical protein C16C8.14 [Caenorhabditis elegans] ref|NP_494545.1| C16C8.14 [Caenorhabditis elegans] 9.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR000626 EMBL-EBI Ubiquitin 7.9E-7
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 5.3E-37
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 5.3E-37
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494541.1 2 4-26,131-153
C16C8.17 2 4-26,131-153
Sequence
Target Sequence 
>C. ELEGANS:184385_AT
gaattggttgacacttttcatactatttggtgccatttccaaaatcgaggccttcataaa
taaaaaccctctggaaaattccgatattgctgaaatactccctggggatcctggggagaa
tccagaagagtctgaagaatctgaccgcgcaggagtttcaagagagctagaagaggttcg
agttctagaagaaccagaagttccagatgttcctgaagccctagaagagcatgaagtttc
ccaggagctagaagaaactgatcaaccagaagatccctgtcaatcctgtcctatgattag
ctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTGGTTGACACTTTTCATACTA 643 323 435 Antisense
TTTTCATACTATTTGGTGCCATTTC 510 675 449 Antisense
GTGCCATTTCCAAAATCGAGGCCTT 644 475 464 Antisense
ATTGCTGAAATACTCCCTGGGGATC 148 7 520 Antisense
CCCTGGGGATCCTGGGGAGAATCCA 230 1 534 Antisense
GAGTCTGAAGAATCTGACCGCGCAG 655 397 562 Antisense
ATCTGACCGCGCAGGAGTTTCAAGA 697 33 573 Antisense
AGTTCCAGATGTTCCTGAAGCCCTA 70 65 633 Antisense
GAGCATGAAGTTTCCCAGGAGCTAG 281 389 661 Antisense
ACCAGAAGATCCCTGTCAATCCTGT 197 87 699 Antisense
GTCAATCCTGTCCTATGATTAGCTT 674 463 713 Antisense
Sequence Source Affymetrix Proprietary Database