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[184384_s_at]

Description Y17G9A.2 /REP_DB=WormBase Gene ID /WP=CE27467 /TR=Q9N486 /GB=AAF60437.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 31      4grp_total > 53      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 155.6
(3)
A 		128.1
(1.9)
A 		105.4
(1)
A 		8.4
(-3)
A 		147
B 131.4
(3)
A 		106.4
(1.7)
A 		83.1
(0.5)
A 		17.6
(-3)
A 		114
C 179.8
(3)
A 		124.5
(0.1)
A 		80
(-2.2)
A 		63.9
(-3)
A 		116
avr 155.6
(3) 		119.7
(1.3) 		89.5
(-0.2) 		30
(-3) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 218
1 2 3 4 5 6 range
A 165.8
(0.5)
A 		162.9
(0.4)
A 		254.1
(3)
P 		211
(1.8)
P 		136.9
(-0.3)
A 		43.5
(-3)
A 		211
B 155.8
(-0.1)
A 		230.7
(3)
M 		184.8
(1.1)
P 		190.3
(1.3)
M 		214.5
(2.3)
P 		84.6
(-3)
A 		146
C 131.9
(-1)
A 		261.5
(3)
P 		186.6
(0.7)
A 		228.3
(2)
A 		143.4
(-0.7)
P 		68.9
(-3)
A 		193
avr 151.2
(0.4) 		218.4
(3) 		208.5
(2.6) 		209.9
(2.7) 		164.9
(0.9) 		65.7
(-3) 		153
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 56.7
(3)
A 		27.8
(-0.1)
A 		27.5
(-0.2)
A 		1.2
(-3)
A 		56
B 41.9
(3)
A 		26.3
(0.5)
A 		19.3
(-0.5)
A 		3.7
(-3)
A 		38
C 59.5
(3)
A 		35.8
(0.1)
A 		27.9
(-0.9)
A 		10.8
(-3)
A 		49
avr 52.7
(3) 		30
(0.1) 		24.9
(-0.5) 		5.2
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 30.6
(-0.5)
A 		57.9
(3)
A 		55.3
(2.7)
P 		53.5
(2.4)
P 		41.3
(0.9)
A 		10.6
(-3)
A 		47
B 54.2
(-0.6)
A 		76.8
(1.9)
M 		44.9
(-1.6)
P 		50.4
(-1)
M 		87.1
(3)
P 		31.5
(-3)
A 		56
C 48.9
(-0.3)
A 		79.8
(3)
P 		47.5
(-0.4)
A 		45.9
(-0.6)
A 		46.4
(-0.5)
P 		23.1
(-3)
A 		57
avr 44.6
(-0.2) 		71.5
(3) 		49.2
(0.3) 		49.9
(0.4) 		58.3
(1.4) 		21.7
(-3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184384_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10899
Sequence Type Exemplar sequence
Representative Public ID Y17G9A.2 NCBI
Target Description Y17G9A.2 /REP_DB=WormBase Gene ID /WP=CE27467 /TR=Q9N486 /GB=AAF60437.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068255(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068255 NCBI Caenorhabditis elegans Y17G9A.2 (Y17G9A.2) mRNA, complete cds. 11/11 None
SNAP00000012343 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4854435:4855600:-1 11/11 None
GENEFINDER00000012353 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4854435:4855600:-1 11/11 None
Y17G9A.2 ENSEMBL cdna:known chromosome:CEL140:IV:4854435:4856261:-1 gene:Y17G9A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4854440-4855606(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y17G9A.2
Entrez Gene 177257 Entrez gene
SwissProt Q9N486 EMBL-EBI
WormBase CE27467 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500656 Y17G9A.2 [Caenorhabditis elegans] gb|AAF60437.2| Hypothetical protein Y17G9A.2 [Caenorhabditis elegans] 1.0E-128
blast NP_500656 Y17G9A.2 [Caenorhabditis elegans] gb|AAF60437.2| Hypothetical protein Y17G9A.2 [Caenorhabditis elegans] 1.0E-120
blast NP_500656 Y17G9A.2 [Caenorhabditis elegans] gb|AAF60437.2| Hypothetical protein Y17G9A.2 [Caenorhabditis elegans] 1.0E-116
blast NP_500658 Y17G9A.4 [Caenorhabditis elegans] gb|AAF60440.1| Hypothetical protein Y17G9A.4 [Caenorhabditis elegans] 4.0E-53
blast NP_500658 Y17G9A.4 [Caenorhabditis elegans] gb|AAF60440.1| Hypothetical protein Y17G9A.4 [Caenorhabditis elegans] 2.0E-52
blast NP_500658 Y17G9A.4 [Caenorhabditis elegans] gb|AAF60440.1| Hypothetical protein Y17G9A.4 [Caenorhabditis elegans] 4.0E-49
blast NP_001022111 F22E5.21 [Caenorhabditis elegans] gb|AAY55841.1| Hypothetical protein F22E5.21 [Caenorhabditis elegans] 5.0E-48
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500656.1 1 17-39
Y17G9A.2 1 17-39
SNAP00000012343 1 17-39
GENEFINDER00000012353 1 17-39
Sequence
Target Sequence 
>C. ELEGANS:184384_S_AT
ctgcatttcttctctatcaactaatggatagtacttcttgcaaagatcccaggcttccac
tgaaaatggactatgtttggccgggtaacgttcaaaaaattattgactacgttatagaaa
atgacatgcatgtcacgaataacgatagaacgtttattataagaacagagctgatgaggt
ttaaaactaccgacgagttctatataatcgtatacgatcacacgccggaatctaacaatc
atgcattctacggaaacaaggatcaatatattgtttccataaaccccggaaagtcaaatg
ttgttgtatatagaagccgcttctggaaaagctcccaggatagtgcctacaacaaagtga
tgcgagaagtcgatgctctcaaagaaaatggaattcaattcgaaaccgattattctcatc
ttccaaagcaactgtcgcgaaacttcacagattccaattttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGCATTTCTTCTCTATCAACTAAT 94 239 116 Antisense
TTCTTGCAAAGATCCCAGGCTTCCA 706 687 150 Antisense
TGGACTATGTTTGGCCGGGTAACGT 12 545 182 Antisense
AATCGTATACGATCACACGCCGGAA 200 169 321 Antisense
CACGCCGGAATCTAACAATCATGCA 64 201 336 Antisense
GAAGCCGCTTCTGGAAAAGCTCCCA 28 345 428 Antisense
AAAGCTCCCAGGATAGTGCCTACAA 214 125 443 Antisense
GTGCCTACAACAAAGTGATGCGAGA 28 479 458 Antisense
GATTATTCTCATCTTCCAAAGCAAC 498 429 523 Antisense
AAAGCAACTGTCGCGAAACTTCACA 546 123 540 Antisense
GAAACTTCACAGATTCCAATTTTAT 267 357 554 Antisense
Sequence Source Affymetrix Proprietary Database