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[184383_at]

Description C12D12.4 /REP_DB=WormBase Gene ID /WP=CE06816 /TR=Q17918 /GB=AAA96077.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 3.3
(-2.9)
A 		17.2
(3)
A 		3.1
(-3)
A 		6.3
(-1.6)
A 		14
B 14.3
(0.6)
A 		23.1
(3)
A 		1.4
(-2.8)
A 		0.8
(-3)
A 		22
C 12.3
(-0.7)
A 		3.7
(-3)
A 		4.1
(-2.9)
A 		25.9
(3)
A 		22
avr 10
(0.6) 		14.7
(3) 		2.9
(-3) 		11
(1.1) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.2
(-3)
A 		2.7
(-2.4)
A 		3.8
(-2)
A 		17.4
(3)
A 		13.7
(1.6)
A 		2.8
(-2.4)
A 		16
B 8.1
(3)
A 		2.1
(-2.6)
A 		2.6
(-2.2)
A 		6.8
(1.8)
A 		4.6
(-0.3)
A 		1.7
(-3)
A 		6
C 10.7
(3)
A 		4.4
(-0.9)
A 		1.1
(-3)
A 		2.6
(-2.1)
A 		2.2
(-2.3)
A 		8.3
(1.5)
A 		10
avr 6.7
(0.9) 		3.1
(-2.4) 		2.5
(-3) 		8.9
(3) 		6.8
(1) 		4.3
(-1.3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.2
(-2.2)
A 		3.7
(3)
A 		0.8
(-3)
A 		0.9
(-2.8)
A 		3
B 4.5
(1.7)
A 		5.7
(3)
A 		0.3
(-2.9)
A 		0.2
(-3)
A 		6
C 4.1
(2.5)
A 		1.1
(-3)
A 		1.4
(-2.5)
A 		4.4
(3)
A 		3
avr 3.3
(2.6) 		3.5
(3) 		0.8
(-3) 		1.8
(-0.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.2
(-3)
A 		1
(-1.9)
A 		0.8
(-2.1)
A 		4.4
(3)
A 		4.1
(2.6)
A 		0.7
(-2.3)
A 		4
B 2.8
(3)
A 		0.7
(-2.7)
A 		0.6
(-3)
A 		1.8
(0.3)
A 		1.9
(0.5)
A 		0.6
(-3)
A 		2
C 4
(3)
A 		1.3
(-1.4)
A 		0.3
(-3)
A 		0.5
(-2.7)
A 		0.7
(-2.4)
A 		2.8
(1.1)
A 		4
avr 2.3
(3) 		1
(-1.6) 		0.6
(-3) 		2.2
(2.6) 		2.2
(2.6) 		1.4
(-0.2) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184383_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18511
Sequence Type Exemplar sequence
Representative Public ID C12D12.4 NCBI
Target Description C12D12.4 /REP_DB=WormBase Gene ID /WP=CE06816 /TR=Q17918 /GB=AAA96077.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076197(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076197 NCBI Caenorhabditis elegans C12D12.4 (C12D12.4) mRNA, complete cds. 11/11 None
C12D12.4 ENSEMBL cdna:known chromosome:CEL140:X:3486296:3486825:-1 gene:C12D12.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
ZK593.1 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3486296-3486826(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C12D12.4
Entrez Gene 182546 Entrez gene
SwissProt Q17918 EMBL-EBI
WormBase CE06816 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96077 Hypothetical protein C12D12.4 [Caenorhabditis elegans] ref|NP_508598.1| C12D12.4 [Caenorhabditis elegans] 1.0E-58
Sequence
Target Sequence 
>C. ELEGANS:184383_AT
caccgacaatgagcgtcttcttgaccttttgagcactgccataagcttcttaggaattat
cttcttacctaaattatcaaaaactatttgggaggaacaaaacccaaagtatccgatgtt
tatttcgaagaaaaaaattgcaaaacataatacgtcacaatgttatcaatgggaccttct
gatatgttttttccaggagaaacctaatcgaaaaacaaaacaaaaaatcaaatcgcaaag
aaaaatgtctggattcattcatcttttttcaaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCGACAATGAGCGTCTTCTTGAC 241 201 18 Antisense
AATGAGCGTCTTCTTGACCTTTTGA 552 163 25 Antisense
CTTGACCTTTTGAGCACTGCCATAA 324 217 37 Antisense
TGAGCACTGCCATAAGCTTCTTAGG 44 549 47 Antisense
GCTTCTTAGGAATTATCTTCTTACC 500 305 62 Antisense
ATTATCTTCTTACCTAAATTATCAA 466 13 73 Antisense
GAACAAAACCCAAAGTATCCGATGT 112 353 112 Antisense
AATACGTCACAATGTTATCAATGGG 497 171 166 Antisense
ATCAATGGGACCTTCTGATATGTTT 353 25 182 Antisense
GATATGTTTTTTCCAGGAGAAACCT 32 419 198 Antisense
GGATTCATTCATCTTTTTTCAAAAA 412 509 268 Antisense
Sequence Source Affymetrix Proprietary Database