[Home] | [Total List]

[184382_at]

Description Y49F6C.1 /REP_DB=WormBase Gene ID /WP=CE22265 /TR=Q9TYI8 /GB=AAD12864.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 21      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 14.9
(-1.3)
A 		29
(3)
A 		14.7
(-1.4)
A 		9.5
(-3)
A 		20
B 10.3
(-2.1)
A 		13
(-1.4)
A 		7.3
(-3)
A 		28.4
(3)
A 		21
C 26.3
(3)
A 		3.7
(-3)
A 		14.1
(-0.2)
A 		22.8
(2.1)
A 		23
avr 17.2
(0.8) 		15.2
(-0.7) 		12
(-3) 		20.2
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 2.7
(-3)
A 		27.9
(2.8)
A 		13.4
(-0.5)
A 		11
(-1.1)
A 		26.1
(2.4)
A 		28.6
(3)
A 		26
B 16.1
(-0.7)
A 		20.1
(-0)
A 		37
(3)
A 		36.3
(2.9)
A 		23.9
(0.7)
A 		3.4
(-3)
A 		34
C 20.3
(-3)
A 		22.2
(-2.6)
A 		20.5
(-3)
A 		52.4
(3)
A 		24.7
(-2.2)
A 		24
(-2.3)
A 		32
avr 13
(-3) 		23.4
(0.1) 		23.6
(0.1) 		33.2
(3) 		24.9
(0.5) 		18.7
(-1.3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 5.4
(1.9)
A 		6.3
(3)
A 		3.8
(-0.1)
A 		1.4
(-3)
A 		5
B 3.3
(-0.8)
A 		3.2
(-1)
A 		1.7
(-3)
A 		6.1
(3)
A 		4
C 8.7
(3)
A 		1.1
(-3)
A 		4.9
(0)
A 		3.9
(-0.8)
A 		8
avr 5.8
(3) 		3.5
(-3) 		3.5
(-3) 		3.8
(-2.2) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.5
(-3)
A 		9.9
(3)
A 		2.9
(-1.5)
A 		2.8
(-1.5)
A 		7.9
(1.7)
A 		7
(1.1)
A 		9
B 5.6
(0.1)
A 		6.7
(0.9)
A 		9
(2.5)
A 		9.6
(2.9)
A 		9.7
(3)
A 		1.3
(-3)
A 		8
C 7.5
(-0.4)
A 		6.8
(-1.2)
A 		5.2
(-3)
A 		10.5
(3)
A 		8
(0.2)
A 		8
(0.2)
A 		5
avr 4.5
(-3) 		7.8
(2) 		5.7
(-1.2) 		7.6
(1.7) 		8.5
(3) 		5.4
(-1.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184382_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4229
Sequence Type Exemplar sequence
Representative Public ID Y49F6C.1 NCBI
Target Description Y49F6C.1 /REP_DB=WormBase Gene ID /WP=CE22265 /TR=Q9TYI8 /GB=AAD12864.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062125(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062125 NCBI Caenorhabditis elegans Y49F6C.1 (Y49F6C.1) mRNA, complete cds. 11/11 None
SNAP00000037278 ENSEMBL cdna:SNAP chromosome:CEL140:II:3380283:3381160:1 11/11 None
Y49F6C.1 ENSEMBL cdna:known chromosome:CEL140:II:3380283:3381160:1 gene:Y49F6C.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3380281-3381159(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y49F6C.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494526 Y49F6C.1 [Caenorhabditis elegans] 1.0E-138
blast AAF39858 Hypothetical protein F59H6.10 [Caenorhabditis elegans] 9.0E-65
blast AAD12865 Hypothetical protein Y49F6C.3 [Caenorhabditis elegans] ref|NP_494524.1| Y49F6C.3 [Caenorhabditis elegans] 1.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 3.6E-31
Pfam IPR000210 EMBL-EBI BTB/POZ domain 7.7E-30
Sequence
Target Sequence 
>C. ELEGANS:184382_AT
tcatttagatgtgtacctccgttgtacgaaattgacggaaaatgatgaaatttgtgcaat
tgatacggaattcgaattaactcttaaaacttcaaatgggaaacaaatgagtcgtagggt
caaagttgactttacacttgaaaacatcatgatacccgcatggagatggtctaaggttgt
tagttgggagacattgttgaaggaatacctaattgatgatagtatcattgtggaagcagc
cgtcatgatcaaagcgatgactgggatccctaggatgaagcttagaagcttcgagaagtc
ggctcaggagtattctgatgcgattatagcaattggagatgaaaagttctacgttctcaa
gaagtttctcgctgctcactcaacttacttcaaggatctcctcttcggagacttcgactt
cgaacaagctgaaaattcagaaatcacactctccgatatcaattctaccgattttcagtg
tctcctggaggttctatacggagaacctgctattgatgaagagaacattgacggaatcct
caaattggctcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATTTAGATGTGTACCTCCGTTGT 417 615 153 Antisense
GATACCCGCATGGAGATGGTCTAAG 620 423 303 Antisense
GTGGAAGCAGCCGTCATGATCAAAG 536 491 382 Antisense
CAAAGCGATGACTGGGATCCCTAGG 510 189 402 Antisense
AGCTTCGAGAAGTCGGCTCAGGAGT 92 77 439 Antisense
CTGCTCACTCAACTTACTTCAAGGA 460 237 524 Antisense
TACTTCAAGGATCTCCTCTTCGGAG 127 645 538 Antisense
CTCTTCGGAGACTTCGACTTCGAAC 648 227 553 Antisense
AATTCAGAAATCACACTCTCCGATA 94 177 586 Antisense
CACTCTCCGATATCAATTCTACCGA 78 199 599 Antisense
GACGGAATCCTCAAATTGGCTCAGA 132 377 682 Antisense
Sequence Source Affymetrix Proprietary Database