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[184381_at]

Description H22K11.4 /REP_DB=WormBase Gene ID /WP=CE27189 /TR=O76633 /GB=AAK39242.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 23      4grp_highest_8_8 > 32      4grp_high_8_8 > 43      6grp_highest_nonorm > 81      6grp_total > 12      4grp_total > 52      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 287.8
(2.5)
P 		294.4
(3)
P 		211.2
(-3)
P 		253.5
(0.1)
P 		83
B 223.2
(0.9)
P 		245
(3)
P 		183.8
(-3)
P 		215.6
(0.1)
P 		61
C 248.6
(-1.3)
P 		237.2
(-1.8)
P 		343
(3)
P 		211.6
(-3)
P 		131
avr 253.2
(1.9) 		258.9
(3) 		246
(0.6) 		226.9
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 223.5
(-0.8)
P 		343.1
(3)
P 		226.8
(-0.7)
P 		311.1
(2)
P 		176.1
(-2.3)
P 		155.5
(-3)
P 		188
B 282.6
(-1)
P 		359.3
(3)
P 		245.5
(-3)
P 		274.8
(-1.4)
P 		278.7
(-1.2)
P 		245
(-3)
P 		114
C 315.5
(1.5)
P 		317.5
(1.6)
P 		350.4
(3)
P 		282.7
(0.1)
P 		223.8
(-2.5)
P 		212.6
(-3)
P 		138
avr 273.9
(0.1) 		340
(3) 		274.2
(0.1) 		289.5
(0.8) 		226.2
(-2) 		204.4
(-3) 		136
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 104.8
(3)
P 		63.9
(-0.6)
P 		55.2
(-1.4)
P 		37.1
(-3)
P 		68
B 71.2
(3)
P 		60.5
(0.8)
P 		42.6
(-3)
P 		45.9
(-2.3)
P 		29
C 82.3
(0.3)
P 		68.2
(-0.7)
P 		119.6
(3)
P 		35.7
(-3)
P 		84
avr 86.1
(3) 		64.2
(0.2) 		72.5
(1.2) 		39.6
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 41.2
(-2.8)
P 		122
(3)
P 		49.4
(-2.2)
P 		78.9
(-0.1)
P 		53.2
(-1.9)
P 		37.9
(-3)
P 		84
B 98.3
(0.9)
P 		119.6
(3)
P 		59.6
(-3)
P 		72.8
(-1.7)
P 		113.2
(2.4)
P 		91.4
(0.2)
P 		60
C 117
(3)
P 		96.9
(1)
P 		89.2
(0.2)
P 		56.8
(-3)
P 		72.4
(-1.4)
P 		71.2
(-1.6)
P 		60
avr 85.5
(-0.5) 		112.8
(3) 		66.1
(-3) 		69.5
(-2.6) 		79.6
(-1.3) 		66.8
(-2.9) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184381_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17194
Sequence Type Exemplar sequence
Representative Public ID H22K11.4 NCBI
Target Description H22K11.4 /REP_DB=WormBase Gene ID /WP=CE27189 /TR=O76633 /GB=AAK39242.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076740(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076740 NCBI Caenorhabditis elegans H22K11.4 (H22K11.4) mRNA, complete cds. 11/11 A 
SNAP00000015667 ENSEMBL cdna:SNAP chromosome:CEL140:X:6787256:6789021:-1 11/11 None
GENEFINDER00000015670 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6787256:6789480:-1 11/11 None
H22K11.4 ENSEMBL cdna:known chromosome:CEL140:X:6787256:6789501:-1 gene:H22K11.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6787668-6789480(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H22K11.4
Entrez Gene 180946 Entrez gene
SwissProt O76633 EMBL-EBI
WormBase CE37119 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16012 sarcoglycan complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39242 Hypothetical protein H22K11.4 [Caenorhabditis elegans] ref|NP_509141.2| H22K11.4 [Caenorhabditis elegans] 0.0
blast CAE65790 Hypothetical protein CBG10894 [Caenorhabditis briggsae] 0.0
blast T33382 hypothetical protein H22K11.4 - Caenorhabditis elegans 0.0
blast T33382 hypothetical protein H22K11.4 - Caenorhabditis elegans 1.0E-173
blast AAK39242 Hypothetical protein H22K11.4 [Caenorhabditis elegans] ref|NP_509141.2| H22K11.4 [Caenorhabditis elegans] 1.0E-172
Protein Domains
Database ID Description E-Value
Pfam IPR008908 EMBL-EBI Sarcoglycan alphaepsilon 1.0E-126
Pfam IPR008908 EMBL-EBI Sarcoglycan alphaepsilon 1.0E-126
Pfam IPR008908 EMBL-EBI Sarcoglycan alphaepsilon 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509141.2 1 299-321
H22K11.4 1 299-321
SNAP00000015667 1 189-211
GENEFINDER00000015670 1 314-336
Sequence
Target Sequence 
>C. ELEGANS:184381_AT
tatattgcaggtgttcgctccagatacattattccacgtggcaaggagcacattttcaaa
aatagtttcggaacaatggtgtatgttggtacacagcaaaagttctatcccggaaccatg
tcaattgtacacaatttacaaactatgcccgagttttgttcaaatccctcatctgtcgtg
atgaataagtattttgcaccaacatttccggtggactggtgtaatgttgcggtaagaaat
atttcatctcttgaaggagaaggtattgatgaattgataaaggatgaacaagaagagaaa
ctgacaaaagcgaatccagatcagaaattttcaaaaaaaaatttcagaaaaaatgtcttt
acatttcagaatttgaacgaaaaacctgaacaacccccacgtgaactatatggatactca
gaacatggttttagcatcgtcttatttgccataattcttggtgtttcaattctttttgtt
tttgcactcgtgctcattttttttgggtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATATTGCAGGTGTTCGCTCCAGAT 273 661 517 Antisense
CGCTCCAGATACATTATTCCACGTG 455 255 532 Antisense
TACACAGCAAAAGTTCTATCCCGGA 134 643 606 Antisense
TATCCCGGAACCATGTCAATTGTAC 561 657 622 Antisense
CTATGCCCGAGTTTTGTTCAAATCC 567 223 659 Antisense
TTCAAATCCCTCATCTGTCGTGATG 51 687 675 Antisense
GCACCAACATTTCCGGTGGACTGGT 708 271 712 Antisense
GGTGGACTGGTGTAATGTTGCGGTA 608 497 726 Antisense
AACAACCCCCACGTGAACTATATGG 449 135 905 Antisense
TTAGCATCGTCTTATTTGCCATAAT 625 681 947 Antisense
CACTCGTGCTCATTTTTTTTGGGTC 331 197 1001 Antisense
Sequence Source Affymetrix Proprietary Database