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[184380_at]

Description C35D10.3 /REP_DB=WormBase Gene ID /WP=CE01197 /TR=Q18487 /GB=AAA62559.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 26      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 7
(-3)
A 		20.9
(0.9)
A 		7.2
(-2.9)
A 		28.3
(3)
A 		21
B 5.1
(0)
A 		6.3
(1)
A 		8.7
(3)
A 		1.5
(-3)
A 		7
C 4.5
(-3)
A 		27.8
(0.4)
A 		4.4
(-3)
A 		45.6
(3)
A 		41
avr 5.5
(-3) 		18.3
(0.9) 		6.8
(-2.6) 		25.1
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 30.5
(-1.4)
A 		10.7
(-2.7)
A 		5.5
(-3)
A 		46.4
(-0.3)
A 		55.5
(0.2)
A 		97.9
(3)
A 		92
B 2.1
(-3)
A 		4.9
(-2.8)
A 		2.4
(-3)
A 		2.8
(-3)
A 		46
(-0.6)
A 		109.8
(3)
P 		108
C 4.5
(-2.8)
A 		2
(-3)
A 		6.3
(-2.6)
A 		2
(-3)
A 		13.7
(-2)
A 		69.9
(3)
P 		68
avr 12.4
(-2.5) 		5.9
(-2.9) 		4.7
(-3) 		17.1
(-2.2) 		38.4
(-0.7) 		92.5
(3) 		88
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2.5
(-1.6)
A 		4.5
(3)
A 		1.9
(-3)
A 		4.1
(2.1)
A 		3
B 1.6
(1.6)
A 		1.6
(1.6)
A 		2
(3)
A 		0.3
(-3)
A 		2
C 1.5
(-3)
A 		8
(3)
A 		1.5
(-3)
A 		7.7
(2.7)
A 		7
avr 1.9
(-2.8) 		4.7
(3) 		1.8
(-3) 		4
(1.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 5.6
(-1.8)
A 		3.8
(-2.3)
A 		1.2
(-3)
A 		11.8
(-0.2)
A 		16.7
(1.1)
A 		23.8
(3)
A 		23
B 0.7
(-3)
A 		1.6
(-2.9)
A 		0.6
(-3)
A 		0.7
(-3)
A 		18.7
(-0.3)
A 		40.9
(3)
P 		40
C 1.7
(-2.7)
A 		0.6
(-2.9)
A 		1.6
(-2.7)
A 		0.4
(-3)
A 		4.4
(-2)
A 		23.4
(3)
P 		23
avr 2.7
(-2.7) 		2
(-2.8) 		1.1
(-3) 		4.3
(-2.3) 		13.3
(-0.4) 		29.4
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184380_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7580
Sequence Type Exemplar sequence
Representative Public ID C35D10.3 NCBI
Target Description C35D10.3 /REP_DB=WormBase Gene ID /WP=CE01197 /TR=Q18487 /GB=AAA62559.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065615(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065615 NCBI Caenorhabditis elegans C35D10.3 (C35D10.3) mRNA, complete cds. 11/11 None
SNAP00000029550 ENSEMBL cdna:SNAP chromosome:CEL140:III:4868891:4870057:1 9/11 None
GENEFINDER00000029563 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4868891:4870057:1 9/11 None
C35D10.3 ENSEMBL cdna:known chromosome:CEL140:III:4869008:4870057:1 gene:C35D10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4869007-4870057(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C35D10.3
Entrez Gene 183237 Entrez gene
SwissProt Q18487 EMBL-EBI
WormBase CE01197 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498016 C35D10.3 [Caenorhabditis elegans] gb|AAA62559.1| Hypothetical protein C35D10.3 [Caenorhabditis elegans] 3.0E-88
blast NP_498016 C35D10.3 [Caenorhabditis elegans] gb|AAA62559.1| Hypothetical protein C35D10.3 [Caenorhabditis elegans] 6.0E-76
blast CAE67716 Hypothetical protein CBG13291 [Caenorhabditis briggsae] 2.0E-35
blast CAE67716 Hypothetical protein CBG13291 [Caenorhabditis briggsae] 3.0E-35
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498016.1 1 42-64
C35D10.3 1 42-64
SNAP00000029550 1 20-42
GENEFINDER00000029563 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:184380_AT
tattgtgtaccaacccgcaaaagctctcttttgtagtaggcgaaagttacgcaatatgca
gcccaaacttatggatgattgttgcttgtacatgcatgacactccttacaatgcttatga
cgttatatatgaattgcgggtttcgaaggaatgtacgatggctgaagttcactgagtgga
agctccagcaactcgccgaacgtctccgcattcaagagccaaatgtaggtcttcttatgc
aagtaaccagaaaagtgaatgataagaagaacagtgataagaaagaattcgactttttca
acaatcgagatcaaaataacaatatcgcaggagcattgaatgaagtggcaagtaagacaa
gtaatggctcaatgggatcaacggatgtagttgctgctcaaatcagaaaggcgagagatg
aagacgtagagaaagtgttgcgggagagtaatatggatattcttactcctgatgtccaac
ccactcaaccaagcactggaggatctcagaaaattctgaaaaagtggacaggagcaacaa
tagatctcttctcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTGTGTACCAACCCGCAAAAGCT 171 665 68 Antisense
AAAGCTCTCTTTTGTAGTAGGCGAA 624 123 87 Antisense
TACGCAATATGCAGCCCAAACTTAT 566 647 115 Antisense
TGCTTGTACATGCATGACACTCCTT 220 579 150 Antisense
GACACTCCTTACAATGCTTATGACG 309 365 165 Antisense
ACGTCTCCGCATTCAAGAGCCAAAT 341 95 267 Antisense
GAGCCAAATGTAGGTCTTCTTATGC 406 385 283 Antisense
GTAATGGCTCAATGGGATCAACGGA 674 453 428 Antisense
GATATTCTTACTCCTGATGTCCAAC 263 427 523 Antisense
ACCCACTCAACCAAGCACTGGAGGA 504 89 546 Antisense
GGAGCAACAATAGATCTCTTCTCGA 191 521 598 Antisense
Sequence Source Affymetrix Proprietary Database