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[184379_at]

Description F49D11.9 /REP_DB=WormBase Gene ID /WP=CE17083 /TR=O44728 /GB=AAB96714.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 83      6grp_total > 99      4grp_total > 59      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 608
1 2 3 4 range
A 529.5
(-0.7)
P 		710.4
(1.5)
P 		841.1
(3)
P 		333.5
(-3)
P 		508
B 681.1
(1)
P 		613.9
(0.3)
P 		867.2
(3)
P 		299
(-3)
P 		568
C 540.5
(-0.2)
P 		690.8
(1.3)
P 		857.3
(3)
P 		259.3
(-3)
P 		598
avr 583.7
(0.1) 		671.7
(1) 		855.2
(3) 		297.3
(-3) 		558

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 335
1 2 3 4 5 6 range
A 308
(-2.9)
P 		503.7
(0.8)
P 		305.1
(-3)
P 		440
(-0.4)
P 		617.9
(3)
P 		558.2
(1.9)
P 		313
B 477.6
(2)
P 		498
(3)
P 		374.7
(-3)
P 		475.2
(1.9)
P 		473
(1.8)
P 		477.3
(2)
P 		123
C 502.2
(0.5)
P 		357.8
(-2.1)
P 		487.7
(0.3)
P 		304.7
(-3)
P 		640.1
(3)
P 		528.9
(1)
P 		335
avr 429.3
(-1.7) 		453.2
(-1) 		389.2
(-3) 		406.6
(-2.4) 		577
(3) 		521.5
(1.2) 		188
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 255
1 2 3 4 range
A 192.8
(2)
P 		154.2
(0.7)
P 		219.9
(3)
P 		48.8
(-3)
P 		171
B 217.2
(3)
P 		151.6
(0.4)
P 		201
(2.4)
P 		63.7
(-3)
P 		154
C 178.9
(0.2)
P 		198.6
(0.6)
P 		298.8
(3)
P 		43.7
(-3)
P 		255
avr 196.3
(1.6) 		168.1
(0.7) 		239.9
(3) 		52.1
(-3) 		188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 56.8
(-3)
P 		179.2
(2.7)
P 		66.4
(-2.6)
P 		111.6
(-0.5)
P 		186.5
(3)
P 		135.9
(0.7)
P 		130
B 166.2
(1.5)
P 		165.8
(1.4)
P 		91
(-3)
P 		125.9
(-0.9)
P 		192.2
(3)
P 		178
(2.2)
P 		101
C 186.2
(2.1)
P 		109.2
(-1)
P 		124.1
(-0.4)
P 		61.3
(-3)
P 		207.1
(3)
P 		177
(1.8)
P 		146
avr 136.4
(-0.5) 		151.4
(0.4) 		93.8
(-3) 		99.6
(-2.7) 		195.3
(3) 		163.6
(1.1) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184379_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.524
Sequence Type Exemplar sequence
Representative Public ID F49D11.9 NCBI
Target Description F49D11.9 /REP_DB=WormBase Gene ID /WP=CE17083 /TR=O44728 /GB=AAB96714.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060449(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060449 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-296) (tag-296) mRNA, complete cds. 11/11 None
SNAP00000015043 ENSEMBL cdna:SNAP chromosome:CEL140:I:10934482:10938163:-1 11/11 None
GENEFINDER00000015057 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10935214:10941828:-1 11/11 None
F49D11.9a ENSEMBL cdna:known chromosome:CEL140:I:10935036:10943837:-1 gene:F49D11.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172997 2 1 NM_060449 184379_at (11)
NM_182047 175327_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10935144-10943768(-) 100.0 100.0
Public Domain and Genome References
Ensembl F49D11.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB96714 Temporarily assigned gene name protein 296, isoform a [Caenorhabditis elegans] ref|NP_492850.1| Temporarily Assigned Gene name family member (tag-296) [Caenorhabditis elegans] 0.0
blast CAE73037 Hypothetical protein CBG20406 [Caenorhabditis briggsae] 0.0
blast CAE73037 Hypothetical protein CBG20406 [Caenorhabditis briggsae] 1.0E-161
blast AAO26011 Temporarily assigned gene name protein 296, isoform b [Caenorhabditis elegans] ref|NP_871847.1| Temporarily Assigned Gene name family member (tag-296) [Caenorhabditis elegans] 1.0E-134
Sequence
Target Sequence 
>C. ELEGANS:184379_AT
tgctccgacgacattatctcagtggattttgcagccgacggacgtcatttgattatttca
acgaaaaaaggagtcgtctgctgggatacactgtgcctattggttgtttggaaaattcaa
caggcagtcggatgcgttgtcaattcaattggatgttttgcatttgaaggagcccaagtt
atgcgttttgatgcggaaactggaagagttttggaaactattcaattctctacaaatatt
gatgaacttgtcgttattcagcaaagagcacacgctttggtttatgttgccaagacggcg
aagggaatcatatgtcaccgtcctgcacacatcaagaatagtggaagatcaggagagatc
gcagttccacagactccattccaacaacttggctcaaaatcaacagctggcccatccaca
gtcacatcggatcaagctttcgtccgtcaacccaggcctgaagcggcccgcttattctcc
ggaccagttcatcagctccctccaatctcgttcatcgctccactttttatcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCCGACGACATTATCTCAGTGG 416 581 2497 Antisense
GGATTTTGCAGCCGACGGACGTCAT 257 509 2520 Antisense
AAAGGAGTCGTCTGCTGGGATACAC 436 121 2563 Antisense
GCAGTCGGATGCGTTGTCAATTCAA 122 313 2620 Antisense
GAGCACACGCTTTGGTTTATGTTGC 127 391 2762 Antisense
AAGGGAATCATATGTCACCGTCCTG 680 157 2797 Antisense
ACCGTCCTGCACACATCAAGAATAG 367 89 2813 Antisense
TCAAAATCAACAGCTGGCCCATCCA 641 629 2890 Antisense
GTCACATCGGATCAAGCTTTCGTCC 545 463 2917 Antisense
CTTATTCTCCGGACCAGTTCATCAG 536 221 2967 Antisense
GTTCATCGCTCCACTTTTTATCGAA 328 445 3006 Antisense
Sequence Source Affymetrix Proprietary Database