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[184377_at]

Description Y48B6A.11 /REP_DB=WormBase Gene ID /WP=CE22126 /TR=Q9U297 /GB=CAB54451.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 17      4grp_highest_8_8 > 56      4grp_high_8_8 > 35      6grp_highest_nonorm > 60      6grp_total > 17      4grp_total > 44      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 304
1 2 3 4 range
A 605
(2.7)
P 		620.3
(3)
P 		368
(-2)
P 		316.2
(-3)
P 		304
B 509.1
(2)
P 		546.3
(3)
P 		325.6
(-3)
P 		375.5
(-1.6)
P 		221
C 568.5
(2.4)
P 		594.2
(3)
P 		399.1
(-1.8)
P 		351.4
(-3)
P 		243
avr 560.9
(2.3) 		586.9
(3) 		364.2
(-2.6) 		347.7
(-3) 		239

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 386
1 2 3 4 5 6 range
A 660.8
(3)
P 		430.9
(-1.1)
P 		364
(-2.2)
P 		320.3
(-3)
P 		342.9
(-2.6)
P 		332.3
(-2.8)
P 		341
B 518.6
(3)
P 		412
(-0)
P 		422.1
(0.3)
P 		307.8
(-3)
P 		330.4
(-2.4)
P 		384
(-0.8)
P 		211
C 590
(3)
P 		367.2
(-1.2)
P 		395.7
(-0.7)
P 		275.1
(-3)
P 		355
(-1.5)
P 		322.9
(-2.1)
P 		315
avr 589.8
(3) 		403.4
(-0.9) 		393.9
(-1.1) 		301.1
(-3) 		342.8
(-2.1) 		346.4
(-2.1) 		289
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 220.3
(3)
P 		134.7
(0)
P 		96.2
(-1.3)
P 		46.3
(-3)
P 		174
B 162.4
(3)
P 		134.9
(1.1)
P 		75.4
(-3)
P 		80
(-2.7)
P 		87
C 188.2
(3)
P 		170.8
(2.2)
P 		139.1
(0.7)
P 		59.3
(-3)
P 		129
avr 190.3
(3) 		146.8
(1) 		103.6
(-1.1) 		61.9
(-3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 121.8
(0.4)
P 		153.3
(3)
P 		79.3
(-3)
P 		81.2
(-2.8)
P 		103.5
(-1)
P 		80.9
(-2.9)
P 		74
B 180.4
(3)
P 		137.2
(0.4)
P 		102.5
(-1.7)
P 		81.5
(-3)
P 		134.2
(0.2)
P 		143.2
(0.7)
P 		99
C 218.7
(3)
P 		112
(-0.9)
P 		100.7
(-1.3)
P 		55.3
(-3)
P 		114.9
(-0.8)
P 		108.1
(-1.1)
P 		163
avr 173.6
(3) 		134.2
(0.7) 		94.2
(-1.7) 		72.7
(-3) 		117.5
(-0.3) 		110.7
(-0.7) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184377_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3041
Sequence Type Exemplar sequence
Representative Public ID Y48B6A.11 NCBI
Target Description Y48B6A.11 /REP_DB=WormBase Gene ID /WP=CE22126 /TR=Q9U297 /GB=CAB54451.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064568(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064568 NCBI Caenorhabditis elegans Y48B6A.11 (Y48B6A.11) mRNA, complete cds. 11/11 None
SNAP00000022969 ENSEMBL cdna:SNAP chromosome:CEL140:II:14235185:14247145:-1 11/11 None
GENEFINDER00000022978 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14235185:14243481:-1 11/11 None
Y48B6A.11 ENSEMBL cdna:known chromosome:CEL140:II:14236684:14243481:-1 gene:Y48B6A.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14236680-14243478(-) 98.96 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48B6A.11
Entrez Gene 175080 Entrez gene
SwissProt Q9U297 EMBL-EBI
WormBase CE22126 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.8295.1.S1_S_AT similar to Jumonji domain containing protein 2A cfa
DROSOPHILA_2:1635774_AT dm
DROSGENOME1:142811_AT dm
CHICKEN:GGAAFFX.23122.1.S1_S_AT similar to Jumonji domain containing protein 2A gga
CHICKEN:GGAAFFX.23122.4.S1_S_AT similar to Jumonji domain containing protein 2A gga
HG-U133_PLUS_2:203205_AT jumonji domain containing 2A hs
HG-U133A:203205_AT jumonji domain containing 2A hs
HG-U133A_2:203205_AT jumonji domain containing 2A hs
HG-U133_PLUS_2:203204_S_AT jumonji domain containing 2A hs
HG-U133A_2:203204_S_AT jumonji domain containing 2A hs
HG-U133A:203204_S_AT jumonji domain containing 2A hs
HU35KSUBA:RC_AA460264_AT jumonji domain containing 2A hs
HU35KSUBA:RC_AA505063_AT jumonji domain containing 2A hs
HUGENEFL:Z70219_AT jumonji domain containing 2A hs
U133_X3P:G7662245_3P_AT jumonji domain containing 2A hs
U133_X3P:G12803466_3P_A_AT jumonji domain containing 2A hs
HG-U95AV2:32073_AT jumonji domain containing 2A hs
MOUSE430_2:1446699_AT jumonji domain containing 2A mm
MOE430B:1446699_AT jumonji domain containing 2A mm
MOE430B:1435340_AT jumonji domain containing 2A mm
MOUSE430_2:1435340_AT jumonji domain containing 2A mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB54451 Hypothetical protein Y48B6A.11 [Caenorhabditis elegans] ref|NP_496969.1| Y48B6A.11 [Caenorhabditis elegans] 0.0
blast CAE73246 Hypothetical protein CBG20662 [Caenorhabditis briggsae] 0.0
blast AAH47193 Jmjd2al protein [Danio rerio] 7.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 1.2E-60
Pfam IPR003349 EMBL-EBI Transcription factor jumonji, JmjN 2.6E-13
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 1.2E-60
Sequence
Target Sequence 
>C. ELEGANS:184377_AT
ggagctcggcgatctctacgagaattcccgttgggaatgtgtcgtctgccatcgaacaga
cgagggtctggctccgtgtgtgctctgtattgaggagcaggcgaccacatcgcttccaac
actggctcatgtcacgtgtgctcgccgtgttggatttgtgtgtgaagttcgtgactatcc
acgtggcgttgtgatgatctgtcataagcacgagcactcgtatctcgtgaataagacgac
gcagcagcaggcctatactaacgtgaaagtcggcgattttgtatttgtggaggacgtggt
ggagccgccgcagaaattgttcacgagaggagccatcgtacgagctgataagaaggagac
cgttgtcgttgacttccttgataatagctgtagtcgtgataatcacgtggaggatatcat
ctcgtgtgaatgcctgttctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCTCGGCGATCTCTACGAGAAT 452 521 2148 Antisense
TCCCGTTGGGAATGTGTCGTCTGCC 33 597 2173 Antisense
GCTCCGTGTGTGCTCTGTATTGAGG 409 299 2218 Antisense
AACACTGGCTCATGTCACGTGTGCT 678 135 2265 Antisense
GTGACTATCCACGTGGCGTTGTGAT 325 483 2318 Antisense
GATCTGTCATAAGCACGAGCACTCG 627 417 2343 Antisense
ATAAGACGACGCAGCAGCAGGCCTA 386 25 2378 Antisense
TGGAGCCGCCGCAGAAATTGTTCAC 443 547 2447 Antisense
GAGAGGAGCCATCGTACGAGCTGAT 598 395 2472 Antisense
AGGAGACCGTTGTCGTTGACTTCCT 89 55 2501 Antisense
CATCTCGTGTGAATGCCTGTTCTGT 545 211 2565 Antisense
Sequence Source Affymetrix Proprietary Database