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[184376_at] 7TM chemoreceptor, srab family

Description R13D11.6 /REP_DB=WormBase Gene ID /WP=CE12792 /TR=O17010 /GB=AAB69946.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 28      6grp_cgc > 51      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 134.6
(-2.4)
A 		188.1
(1)
A 		125.7
(-3)
A 		219.4
(3)
A 		94
B 161.9
(0.9)
A 		192.9
(3)
A 		106.3
(-3)
A 		123.1
(-1.8)
A 		87
C 167.9
(0.9)
P 		134.5
(-0.8)
M 		91
(-3)
A 		210.4
(3)
A 		119
avr 154.8
(0.7) 		171.8
(2) 		107.7
(-3) 		184.3
(3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 141.8
(3)
M 		118.3
(1.9)
A 		126.3
(2.3)
A 		141
(3)
P 		125
(2.2)
A 		9.9
(-3)
A 		132
B 98
(0)
A 		146.7
(3)
A 		99.7
(0.1)
A 		102.9
(0.3)
A 		125.1
(1.7)
A 		48.7
(-3)
A 		98
C 119.6
(1)
A 		163.6
(3)
A 		116.2
(0.9)
A 		127.4
(1.4)
A 		97.4
(0)
A 		29.6
(-3)
A 		134
avr 119.8
(1.8) 		142.9
(3) 		114.1
(1.5) 		123.8
(2) 		115.8
(1.6) 		29.4
(-3) 		114
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 49
(3)
A 		40.8
(0.1)
A 		32.9
(-2.7)
A 		32.1
(-3)
A 		17
B 51.6
(3)
A 		47.6
(2.1)
A 		24.6
(-3)
A 		26.2
(-2.6)
A 		27
C 55.6
(3)
P 		38.7
(-1.2)
M 		31.7
(-3)
A 		35.5
(-2)
A 		24
avr 52.1
(3) 		42.4
(0.4) 		29.7
(-3) 		31.3
(-2.6) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 26.1
(0.6)
M 		42.1
(3)
A 		27.5
(0.8)
A 		35.8
(2)
P 		37.7
(2.3)
A 		2.4
(-3)
A 		40
B 34.1
(-0.1)
A 		48.8
(2.6)
A 		24.2
(-1.9)
A 		27.3
(-1.3)
A 		50.8
(3)
A 		18.2
(-3)
A 		33
C 44.3
(2.2)
A 		49.9
(3)
A 		29.6
(-0)
A 		25.6
(-0.6)
A 		31.5
(0.2)
A 		9.9
(-3)
A 		40
avr 34.8
(1) 		46.9
(3) 		27.1
(-0.2) 		29.6
(0.2) 		40
(1.9) 		10.2
(-3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184376_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15365
Sequence Type Exemplar sequence
Representative Public ID R13D11.6 NCBI
Target Description R13D11.6 /REP_DB=WormBase Gene ID /WP=CE12792 /TR=O17010 /GB=AAB69946.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070924(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070924 NCBI Caenorhabditis elegans Serpentine Receptor, class AB (class A-like) family member (srab-16) (srab-16) mRNA, complete cds. 10/11 None
GENEFINDER00000031844 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:782586:784593:1 10/11 None
R13D11.6 ENSEMBL cdna:known chromosome:CEL140:V:782586:784580:1 gene:R13D11.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031822 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:782585-784580(+) 97.95 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srab family
Gene Symbol srab-16
Ensembl R13D11.6
Entrez Gene 187865 Entrez gene
SwissProt O17010 EMBL-EBI
WormBase CE38213 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503325 Serpentine Receptor, class AB (class A-like) family member (srab-16) [Caenorhabditis elegans] gb|AAB69946.2| Serpentine receptor, class ab (class a-like) protein 16 [Caenorhabditis elegans] 0.0
blast NP_503325 Serpentine Receptor, class AB (class A-like) family member (srab-16) [Caenorhabditis elegans] gb|AAB69946.2| Serpentine receptor, class ab (class a-like) protein 16 [Caenorhabditis elegans] 1.0E-170
blast CAE74134 Hypothetical protein CBG21805 [Caenorhabditis briggsae] 1.0E-156
blast CAE74134 Hypothetical protein CBG21805 [Caenorhabditis briggsae] 1.0E-141
blast AAC48243 Serpentine receptor, class ab (class a-like) protein 25 [Caenorhabditis elegans] ref|NP_503494.1| Serpentine Receptor, class AB (class A-like) family member (srab-25) [Caenorhabditis elegans] 6.0E-61
blast AAC48243 Serpentine receptor, class ab (class a-like) protein 25 [Caenorhabditis elegans] ref|NP_503494.1| Serpentine Receptor, class AB (class A-like) family member (srab-25) [Caenorhabditis elegans] 3.0E-54
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503325.2 7 15-37,50-72,98-120,140-159,179-201,243-260,270-292
R13D11.6 7 15-37,50-72,98-120,140-159,179-201,243-260,270-292
GENEFINDER00000031844 7 15-37,50-72,98-120,140-159,179-201,243-260,270-292
Sequence
Target Sequence 
>C. ELEGANS:184376_AT
gctattgctttattttcggccagattttcatgggaaccaccacgacgattgcgatttttt
ataaatttgatttcaatcaaggacaggagttttgttcgggtagccaatcttccgacccag
cctatatgatcataccagaatcggtggcaatattgtcaaatttcatagctttcttccaat
ttggcaaactaatgagaatcaatacaaaaatccgagtaggaagctctgaaaacaacttga
gccaaaagtatcaaattgaggaaaatttgaatgttgtgagaatactccgtgcgttcacga
aatgcgatttcgtatttattttaatttattttaccatgggaatcccgttccatttggttg
gcaaacatttggatcatgcagattattatgcacttttcgaggtgatctactttgttccaa
tatactcgctaatcatgccagcctacatttatcaattctccaaaaaagttagtattttct
gtccaaaaattcttagaaattttccaaaaataatcgcaacacttccagcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTATTGCTTTATTTTCGGCCAGAT 426 303 431 Antisense
GGAACCACCACGACGATTGCGATTT 36 531 463 Antisense
TGTTCGGGTAGCCAATCTTCCGACC 473 561 523 Antisense
TTCCGACCCAGCCTATATGATCATA 493 697 540 Antisense
GTCAAATTTCATAGCTTTCTTCCAA 345 465 585 Antisense
GTGAGAATACTCCGTGCGTTCACGA 100 483 706 Antisense
ATGGGAATCCCGTTCCATTTGGTTG 451 49 766 Antisense
TTCGAGGTGATCTACTTTGTTCCAA 676 695 826 Antisense
ATACTCGCTAATCATGCCAGCCTAC 455 23 852 Antisense
GCCAGCCTACATTTATCAATTCTCC 128 281 867 Antisense
AAAATAATCGCAACACTTCCAGCAA 513 133 937 Antisense
Sequence Source Affymetrix Proprietary Database