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[184375_at]

Description H10D12.2 /REP_DB=WormBase Gene ID /WP=CE17145 /TR=O44520 /GB=AAB93487.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 42      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 59.3
(-3)
A 		62
(-2.4)
A 		84.4
(3)
A 		83
(2.7)
P 		25
B 39.6
(-1.6)
A 		67.2
(3)
A 		60.5
(1.9)
A 		31.1
(-3)
A 		36
C 68.9
(1.3)
A 		80.7
(3)
A 		39.1
(-3)
A 		71.1
(1.6)
M 		42
avr 55.9
(-3) 		70
(3) 		61.3
(-0.7) 		61.7
(-0.5) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 52.9
(2.7)
A 		51
(2.5)
A 		54.9
(3)
A 		31.6
(-0.2)
A 		11
(-3)
A 		31.2
(-0.2)
A 		44
B 50.5
(2.2)
A 		45.7
(0.6)
A 		52.4
(2.8)
A 		34.6
(-3)
A 		53
(3)
A 		45.5
(0.6)
A 		18
C 37.8
(-0.8)
A 		55.2
(3)
A 		45.4
(0.9)
A 		27.7
(-3)
A 		37.4
(-0.9)
A 		53.9
(2.7)
P 		28
avr 47.1
(1.8) 		50.6
(2.9) 		50.9
(3) 		31.3
(-3) 		33.8
(-2.2) 		43.5
(0.7) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 21.6
(2.7)
A 		13.5
(-2.2)
A 		22.1
(3)
A 		12.2
(-3)
P 		10
B 12.6
(0.6)
A 		16.6
(3)
A 		14
(1.4)
A 		6.6
(-3)
A 		10
C 22.8
(2.8)
A 		23.2
(3)
A 		13.6
(-2.1)
A 		12
(-3)
M 		11
avr 19
(3) 		17.8
(2.2) 		16.6
(1.3) 		10.3
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 9.7
(-0.4)
A 		18.1
(3)
A 		11.9
(0.5)
A 		8
(-1.1)
A 		3.3
(-3)
A 		7.6
(-1.3)
A 		15
B 17.6
(1.1)
A 		15.2
(-0.1)
A 		12.7
(-1.3)
A 		9.2
(-3)
A 		21.5
(3)
A 		17
(0.8)
A 		12
C 14
(1.1)
A 		16.8
(2.4)
A 		11.6
(-0.1)
A 		5.6
(-3)
A 		12.1
(0.1)
A 		18
(3)
P 		12
avr 13.8
(1.1) 		16.7
(3) 		12.1
(-0) 		7.6
(-3) 		12.3
(0.1) 		14.2
(1.4) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184375_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10471
Sequence Type Exemplar sequence
Representative Public ID H10D12.2 NCBI
Target Description H10D12.2 /REP_DB=WormBase Gene ID /WP=CE17145 /TR=O44520 /GB=AAB93487.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068521(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068521 NCBI Caenorhabditis elegans H10D12.2 (H10D12.2) mRNA, complete cds. 11/11 None
H10D12.2 ENSEMBL cdna:known chromosome:CEL140:IV:6147523:6149911:-1 gene:H10D12.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030425 3/11 Cross Hyb Matching Probes None
GENEFINDER00000030437 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6147528-6149917(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H10D12.2
Entrez Gene 186712 Entrez gene
SwissProt O44520 EMBL-EBI
WormBase CE17145 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93487 Hypothetical protein H10D12.2 [Caenorhabditis elegans] ref|NP_500922.1| H10D12.2 [Caenorhabditis elegans] 1.0E-135
Sequence
Target Sequence 
>C. ELEGANS:184375_AT
gtgagaccaacacttcaggatccgaaaatgaagaaaacacttcacaaaataaaatggagg
atctggaagaaatcccagttgctgagaaagttgctgatctaattgagcatgcttccgatg
aagctgagaatgataatggctcagacatccccgacatgggtgagaccaacactccaggag
gcggtagtgaagaaaacactttgaaaaataaattagaggatctggaagaaattccagttg
ctgatccaattgagcatgctttcgatggagctgagaatgataatggttcagacattcctg
atattggtaaaccacttcattcagttattgtgaaagatttaagcgaccacctcgttccgt
ccattttgatatcgtcctctgatttgtctgaagtttccgttcaatatttgtggagtatat
ttttctggtccgatttcgtatttgtaaagcccaaaatacgtaacttccgtctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAGACCAACACTTCAGGATCCGA 282 481 251 Antisense
GATCTAATTGAGCATGCTTCCGATG 391 417 346 Antisense
ATGATAATGGCTCAGACATCCCCGA 191 45 380 Antisense
GACATCCCCGACATGGGTGAGACCA 636 367 394 Antisense
GAGACCAACACTCCAGGAGGCGGTA 192 389 412 Antisense
GCTGATCCAATTGAGCATGCTTTCG 670 295 490 Antisense
GAAAGATTTAAGCGACCACCTCGTT 173 359 582 Antisense
CTCGTTCCGTCCATTTTGATATCGT 405 233 601 Antisense
GATATCGTCCTCTGATTTGTCTGAA 25 427 618 Antisense
ATATTTTTCTGGTCCGATTTCGTAT 195 19 667 Antisense
GCCCAAAATACGTAACTTCCGTCTG 137 283 699 Antisense
Sequence Source Affymetrix Proprietary Database