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[184374_at]

Description R13D11.5 /REP_DB=WormBase Gene ID /WP=CE12790 /TR=O17011 /GB=AAB69945.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 22      6grp_cgc > 96      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 35
(0.9)
A 		10.8
(-2.3)
A 		5.9
(-3)
A 		50.7
(3)
A 		45
B 33.9
(3)
A 		28
(1.2)
A 		30.5
(2)
A 		14.3
(-3)
A 		20
C 16.1
(1.6)
A 		16
(1.5)
A 		4.6
(-3)
A 		19.7
(3)
A 		15
avr 28.3
(3) 		18.3
(-1.1) 		13.7
(-3) 		28.2
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 3
(-3)
A 		4.8
(-2.6)
A 		9.4
(-1.6)
A 		21.8
(1.2)
A 		12.5
(-0.9)
A 		30
(3)
A 		27
B 5.7
(-2.5)
A 		5.8
(-2.5)
A 		3.1
(-2.9)
A 		40.4
(3)
A 		13.5
(-1.2)
A 		2.4
(-3)
A 		38
C 11.5
(1.6)
A 		14
(3)
A 		3.5
(-2.9)
A 		5.3
(-1.9)
A 		3.4
(-3)
A 		3.9
(-2.7)
A 		11
avr 6.7
(-2.5) 		8.2
(-2) 		5.3
(-3) 		22.5
(3) 		9.8
(-1.4) 		12.1
(-0.6) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 12.7
(3)
A 		2.3
(-2.6)
A 		1.5
(-3)
A 		7.4
(0.2)
A 		11
B 10.8
(3)
A 		6.9
(-0)
A 		7.1
(0.1)
A 		3.1
(-3)
A 		8
C 5.3
(3)
A 		4.6
(1.9)
A 		1.6
(-3)
A 		3.3
(-0.2)
A 		4
avr 9.6
(3) 		4.6
(-1.8) 		3.4
(-3) 		4.6
(-1.8) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.7
(-2)
A 		2
(-1.7)
A 		5.5
(1.4)
A 		3.8
(-0.1)
A 		7.3
(3)
A 		7
B 2
(-2.3)
A 		1.9
(-2.3)
A 		0.8
(-3)
A 		10.7
(3)
A 		5.5
(-0.2)
A 		0.9
(-2.9)
A 		10
C 4.3
(3)
A 		4.3
(3)
A 		0.9
(-3)
A 		1.1
(-2.6)
A 		1.1
(-2.6)
A 		1.3
(-2.3)
A 		3
avr 2.3
(-1.6) 		2.6
(-1.2) 		1.2
(-3) 		5.8
(3) 		3.5
(0) 		3.2
(-0.4) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184374_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15716
Sequence Type Exemplar sequence
Representative Public ID R13D11.5 NCBI
Target Description R13D11.5 /REP_DB=WormBase Gene ID /WP=CE12790 /TR=O17011 /GB=AAB69945.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
R13D11.5 ENSEMBL cdna:known chromosome:CEL140:V:785894:789822:1 gene:R13D11.5 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000031839 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:785893-789822(+) 92.78 100.0
Public Domain and Genome References
Ensembl R13D11.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48243 Serpentine receptor, class ab (class a-like) protein 25 [Caenorhabditis elegans] ref|NP_503494.1| Serpentine Receptor, class AB (class A-like) family member (srab-25) [Caenorhabditis elegans] 7.0E-81
blast CAE74179 Hypothetical protein CBG21852 [Caenorhabditis briggsae] 2.0E-71
blast NP_503325 Serpentine Receptor, class AB (class A-like) family member (srab-16) [Caenorhabditis elegans] gb|AAB69946.2| Serpentine receptor, class ab (class a-like) protein 16 [Caenorhabditis elegans] 5.0E-45
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
R13D11.5 7 169-191,198-215,230-252,265-287,307-329,363-385,413-435
Sequence
Target Sequence 
>C. ELEGANS:184374_AT
ggtaagaaccaggcggtgggcagcaaacgatttttttccggcaagtcggcaaataggaaa
aattgccggaattaaaattgtgacaaatctgcaaatcggcaaactgtcgatttgccaagt
ttgcaggaaaaacaaactccgcaccaactcaaaagtgtcaaatttaagccaaaaatttca
aatcgaggagaacaaaactttgattcgaatcatcatgcgtttctattgcttcgacttcat
ttttatggtactctattttttcggcagttttttactggaagctttgaatgctagaataga
taaagggaccatgtttggaatgttggaatgtgagttttcgtctgaaagttgttttggaag
gattgaatatgtatttacagtaatccattgccttcccgtttacacaattgtcgtttcgtt
tctgatgatgaaagttttcaaaaagagtaacgacgaaaaaacgatgagaattgtttcgga
ggttcaagtgaaggaagatgcttacttcgtttatttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTAAGAACCAGGCGGTGGGCAGCA 227 497 1011 Antisense
GCGGTGGGCAGCAAACGATTTTTTT 511 287 1023 Antisense
AACTCCGCACCAACTCAAAAGTGTC 67 143 1145 Antisense
GATTCGAATCATCATGCGTTTCTAT 180 433 1212 Antisense
ATCATGCGTTTCTATTGCTTCGACT 331 29 1222 Antisense
ATTGCTTCGACTTCATTTTTATGGT 199 5 1235 Antisense
ATGGTACTCTATTTTTTCGGCAGTT 530 49 1255 Antisense
GTTGGAATGTGAGTTTTCGTCTGAA 172 435 1332 Antisense
TGCCTTCCCGTTTACACAATTGTCG 74 585 1399 Antisense
AATTGTCGTTTCGTTTCTGATGATG 448 179 1416 Antisense
AAGATGCTTACTTCGTTTATTTGAA 24 155 1505 Antisense
Sequence Source Affymetrix Proprietary Database