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[184373_at]

Description Y75B7B.1 /REP_DB=WormBase Gene ID /WP=CE24665 /TR=Q9N4D3 /GB=AAF36054.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 30      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 71.5
(3)
A 		9.6
(-3)
A 		15.1
(-2.5)
A 		40.1
(-0)
A 		62
B 92.8
(3)
A 		15.9
(-2.2)
A 		4.6
(-3)
A 		43.8
(-0.3)
M 		88
C 46.2
(-0.4)
A 		46.3
(-0.4)
A 		25.9
(-3)
A 		72.6
(3)
A 		47
avr 70.2
(3) 		23.9
(-2.1) 		15.2
(-3) 		52.2
(1) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 54.9
(2.5)
A 		32
(-0.1)
A 		21.6
(-1.3)
A 		6.4
(-3)
A 		46
(1.5)
A 		59.3
(3)
A 		53
B 8.7
(-2.4)
A 		22.6
(-0.9)
A 		2.9
(-3)
A 		24.1
(-0.8)
A 		47.9
(1.7)
A 		60.2
(3)
A 		57
C 35.3
(-1.3)
A 		22.3
(-2.5)
A 		17.4
(-3)
A 		62.1
(1.1)
A 		47.7
(-0.2)
A 		82.1
(3)
P 		65
avr 33
(-0.9) 		25.6
(-1.7) 		14
(-3) 		30.9
(-1.1) 		47.2
(0.7) 		67.2
(3) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 26
(3)
A 		2.1
(-3)
A 		3.9
(-2.5)
A 		5.9
(-2)
A 		24
B 29.6
(3)
A 		3.9
(-2.4)
A 		1.1
(-3)
A 		9.3
(-1.3)
M 		29
C 15.3
(3)
A 		13.3
(1.1)
A 		9
(-3)
A 		12.2
(0)
A 		6
avr 23.6
(3) 		6.4
(-2.5) 		4.7
(-3) 		9.1
(-1.6) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 10.1
(1)
A 		11.4
(1.6)
A 		4.7
(-1.5)
A 		1.6
(-3)
A 		13.9
(2.8)
A 		14.4
(3)
A 		13
B 3
(-2.4)
A 		7.5
(-1.1)
A 		0.7
(-3)
A 		6.4
(-1.4)
A 		19.5
(2.2)
A 		22.5
(3)
A 		22
C 13.1
(-0.7)
A 		6.8
(-2.4)
A 		4.4
(-3)
A 		12.5
(-0.9)
A 		15.4
(-0.1)
A 		27.5
(3)
P 		23
avr 8.7
(-1.2) 		8.6
(-1.3) 		3.3
(-3) 		6.8
(-1.8) 		16.3
(1.3) 		21.5
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184373_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15698
Sequence Type Exemplar sequence
Representative Public ID Y75B7B.1 NCBI
Target Description Y75B7B.1 /REP_DB=WormBase Gene ID /WP=CE24665 /TR=Q9N4D3 /GB=AAF36054.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070998(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070998 NCBI Caenorhabditis elegans Y75B7B.1 (Y75B7B.1) mRNA, complete cds. 11/11 None
SNAP00000044337 ENSEMBL cdna:SNAP chromosome:CEL140:V:1269883:1275652:1 11/11 None
GENEFINDER00000044341 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1270781:1272802:1 11/11 None
Y75B7B.1 ENSEMBL cdna:known chromosome:CEL140:V:1270781:1272699:1 gene:Y75B7B.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1270780-1272699(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y75B7B.1
Entrez Gene 190699 Entrez gene
SwissProt Q9N4D3 EMBL-EBI
WormBase CE24665 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF36054 Hypothetical protein Y75B7B.1 [Caenorhabditis elegans] ref|NP_503399.1| Y75B7B.1 [Caenorhabditis elegans] 1.0E-170
blast AAF36054 Hypothetical protein Y75B7B.1 [Caenorhabditis elegans] ref|NP_503399.1| Y75B7B.1 [Caenorhabditis elegans] 1.0E-168
blast AAF36054 Hypothetical protein Y75B7B.1 [Caenorhabditis elegans] ref|NP_503399.1| Y75B7B.1 [Caenorhabditis elegans] 1.0E-165
blast AAB37735 Hypothetical protein C01G5.3 [Caenorhabditis elegans] ref|NP_500996.1| C01G5.3 [Caenorhabditis elegans] 1.0E-84
blast AAB37735 Hypothetical protein C01G5.3 [Caenorhabditis elegans] ref|NP_500996.1| C01G5.3 [Caenorhabditis elegans] 8.0E-84
blast AAB37735 Hypothetical protein C01G5.3 [Caenorhabditis elegans] ref|NP_500996.1| C01G5.3 [Caenorhabditis elegans] 2.0E-81
blast NP_498073 C45G9.8 [Caenorhabditis elegans] gb|AAA62551.1| Hypothetical protein C45G9.8 [Caenorhabditis elegans] sp|Q09280|YQI8_CAEEL Hypothetical protein C45G9.8 in chromosome III 8.0E-64
blast NP_498073 C45G9.8 [Caenorhabditis elegans] gb|AAA62551.1| Hypothetical protein C45G9.8 [Caenorhabditis elegans] sp|Q09280|YQI8_CAEEL Hypothetical protein C45G9.8 in chromosome III 3.0E-63
Sequence
Target Sequence 
>C. ELEGANS:184373_AT
caacaaagaaaccctgtcctgtacagaaagataatggaatggatgaagcatcttctttct
acacaaagccgaaggaagcaaagaagaaatcagaagtatcagttttcttgaatatggatg
attatgaccaatttccaaagttggctgatgttctgatgatgtccccatataatgtgttca
atgcagatggagttccattttgggctgtgaatcctgagccaaatgatgaagatttgaaga
ctacagcaccaataatctccgttggaagtgagcatttggagttgtatcacgacaaaaaga
tcactcttcaaaccatcgagaacacacagcttatgctcaatgagcttcaaccattgacgg
aattgatgaaacgagatgagattcacttcacgcctcaacttgtcttttccaatactctac
gatccattgtcaatccacaacaaatggaggagaaacaacggagcggaagtatatcggatg
aaagccaaaagccgggcaagctggtctttgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACAAAGAAACCCTGTCCTGTACA 689 187 503 Antisense
TTCCAAAGTTGGCTGATGTTCTGAT 296 699 635 Antisense
GATGTTCTGATGATGTCCCCATATA 651 409 649 Antisense
GTTCCATTTTGGGCTGTGAATCCTG 395 441 694 Antisense
GACTACAGCACCAATAATCTCCGTT 469 373 741 Antisense
AAAGATCACTCTTCAAACCATCGAG 389 123 798 Antisense
AAACCATCGAGAACACACAGCTTAT 22 127 812 Antisense
CGAGATGAGATTCACTTCACGCCTC 53 251 874 Antisense
TGTCTTTTCCAATACTCTACGATCC 181 559 903 Antisense
ACTCTACGATCCATTGTCAATCCAC 141 101 916 Antisense
AAAGCCGGGCAAGCTGGTCTTTGAT 251 125 990 Antisense
Sequence Source Affymetrix Proprietary Database