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[184372_at]

Description F15G10.2 /REP_DB=WormBase Gene ID /WP=CE09422 /TR=P91258 /GB=AAB42353.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 29      6grp_total > 94      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 94.4
(-3)
A 		109.8
(3)
P 		97.6
(-1.8)
A 		109.6
(2.9)
P 		15
B 91.3
(0.5)
M 		104.3
(3)
P 		104.5
(3)
P 		73.4
(-3)
A 		31
C 88.2
(-1.6)
P 		137.9
(3)
P 		73
(-3)
P 		120.2
(1.4)
A 		65
avr 91.3
(-3) 		117.3
(3) 		91.7
(-2.9) 		101.1
(-0.7) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 102.5
(0.6)
A 		39.3
(-3)
A 		73.1
(-1.1)
P 		49.7
(-2.4)
A 		144.6
(3)
P 		96.5
(0.3)
M 		105
B 88.9
(2.4)
A 		86.5
(2)
A 		92.8
(3)
M 		87.2
(2.1)
A 		53.4
(-3)
A 		82.9
(1.5)
A 		39
C 49.3
(-3)
A 		90.9
(0.4)
P 		82.1
(-0.3)
A 		122
(3)
A 		94.3
(0.7)
P 		66.8
(-1.6)
A 		73
avr 80.2
(-1.1) 		72.2
(-3) 		82.7
(-0.5) 		86.3
(0.4) 		97.4
(3) 		82.1
(-0.6) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 34.4
(3)
A 		23.8
(-0.5)
P 		25.5
(0.1)
A 		16
(-3)
P 		18
B 29.1
(3)
M 		25.8
(1.5)
P 		24.2
(0.8)
P 		15.6
(-3)
A 		14
C 29.2
(-0.2)
P 		39.6
(3)
P 		25.4
(-1.4)
P 		20.3
(-3)
A 		19
avr 30.9
(3) 		29.7
(2.5) 		25
(0.4) 		17.3
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 18.9
(-1.8)
A 		14
(-2.7)
A 		15.9
(-2.4)
P 		12.6
(-3)
A 		43.6
(3)
P 		23.5
(-0.9)
M 		31
B 30.9
(3)
A 		28.8
(1.6)
A 		22.5
(-2.5)
M 		23.1
(-2.1)
A 		21.7
(-3)
A 		30.9
(3)
A 		9
C 18.3
(-3)
A 		27.7
(1.6)
P 		20.9
(-1.7)
A 		24.5
(0)
A 		30.5
(3)
P 		22.4
(-1)
A 		12
avr 22.7
(-1.6) 		23.5
(-1.2) 		19.8
(-3) 		20.1
(-2.9) 		31.9
(3) 		25.6
(-0.1) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184372_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17582
Sequence Type Exemplar sequence
Representative Public ID F15G10.2 NCBI
Target Description F15G10.2 /REP_DB=WormBase Gene ID /WP=CE09422 /TR=P91258 /GB=AAB42353.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029567, NM_171822, NM_171981
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171981 NCBI Caenorhabditis elegans H18N23.2a (H18N23.2) mRNA, complete cds. A 
GENEFINDER00000033485 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17624261:17627877:-1 None
H18N23.2b ENSEMBL cdna:known chromosome:CEL140:X:17622626:17628155:-1 gene:H18N23.2 A 
NM_171822 NCBI Caenorhabditis elegans H18N23.2b (H18N23.2) mRNA, complete cds. A 
H18N23.2c ENSEMBL cdna:known chromosome:CEL140:X:17623725:17640652:-1 gene:H18N23.2 None
H18N23.2a ENSEMBL cdna:known chromosome:CEL140:X:17623725:17628056:-1 gene:H18N23.2 A 
NM_001029567 NCBI Caenorhabditis elegans H18N23.2c (H18N23.2) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17626445-17628172(-) 100.0 100.0
Public Domain and Genome References
Ensembl H18N23.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM69103 Hypothetical protein H18N23.2b [Caenorhabditis elegans] ref|NP_741955.2| H18N23.2b [Caenorhabditis elegans] 0.0
blast NP_001024738 H18N23.2c [Caenorhabditis elegans] 1.0E-179
blast AAZ91346 Hypothetical protein H18N23.2c [Caenorhabditis elegans] 1.0E-174
blast AAM69102 Hypothetical protein H18N23.2a [Caenorhabditis elegans] ref|NP_741956.1| H18N23.2a [Caenorhabditis elegans] 1.0E-172
blast AAZ91346 Hypothetical protein H18N23.2c [Caenorhabditis elegans] 1.0E-172
blast NP_001024738 H18N23.2c [Caenorhabditis elegans] 1.0E-172
Protein Domains
Database ID Description E-Value
Pfam IPR005036 EMBL-EBI Putative phosphatase regulatory subunit 1.5E-18
Pfam IPR005036 EMBL-EBI Putative phosphatase regulatory subunit 1.5E-18
Pfam IPR005036 EMBL-EBI Putative phosphatase regulatory subunit 1.5E-18
Pfam IPR005036 EMBL-EBI Putative phosphatase regulatory subunit 1.5E-18
Sequence
Target Sequence 
>C. ELEGANS:184372_AT
actttccatgctcatcgacagttttgaagatttagacggtgtgattcaggagatcaagtt
tcgattgactaggttcgtttgcagtgggcccccctctccgactattgtttgttattgtaa
ggttttctgctttatacttttctatttcaaagcattgctgctcctaggcgccgatggaaa
tggggcgcgaacgagaatgctgcgtcctctccacatcgccgggctgccgccgagccgcaa
gcttcccctttgtcggcgactcctcaataatacaggcatccagtttgaaggtccgctcca
agagcgagtcggaagccttaaacaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTTCCATGCTCATCGACAGTTTT 142 103 24 Antisense
TGACTAGGTTCGTTTGCAGTGGGCC 140 571 89 Antisense
CCCTCTCCGACTATTGTTTGTTATT 495 259 115 Antisense
GGTTTTCTGCTTTATACTTTTCTAT 140 507 144 Antisense
TTCAAAGCATTGCTGCTCCTAGGCG 152 683 169 Antisense
CTGCTCCTAGGCGCCGATGGAAATG 508 235 181 Antisense
GCGCGAACGAGAATGCTGCGTCCTC 551 287 208 Antisense
TTTGTCGGCGACTCCTCAATAATAC 137 667 272 Antisense
CAGGCATCCAGTTTGAAGGTCCGCT 683 207 296 Antisense
GAAGGTCCGCTCCAAGAGCGAGTCG 638 333 310 Antisense
GAGCGAGTCGGAAGCCTTAAACAAG 136 385 325 Antisense
Sequence Source Affymetrix Proprietary Database