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[184371_at] 7TM chemoreceptor, srx family

Description C04E12.8 /REP_DB=WormBase Gene ID /WP=CE16821 /TR=O76680 /GB=AAC27094.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 24      6grp_cgc > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 1.9
(-3)
A 		18.9
(3)
A 		2.3
(-2.9)
A 		11.9
(0.5)
A 		17
B 0.7
(-3)
A 		0.9
(-3)
A 		39
(3)
A 		11.2
(-1.4)
A 		38
C 0.8
(-3)
A 		3
(-2.7)
A 		3.1
(-2.7)
A 		45.6
(3)
P 		45
avr 1.1
(-3) 		7.6
(-1.2) 		14.8
(0.8) 		22.9
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 18.6
(3)
A 		3
(-2.3)
A 		1
(-3)
A 		3.2
(-2.3)
A 		3.8
(-2)
A 		7.7
(-0.7)
A 		18
B 1.3
(-2.8)
A 		2.3
(-2.3)
A 		3.3
(-1.8)
A 		0.8
(-3)
A 		13.3
(3)
A 		1.4
(-2.7)
A 		13
C 1.9
(1)
A 		1.2
(-1)
A 		2
(1.3)
A 		2.6
(3)
A 		2.4
(2.4)
A 		0.5
(-3)
A 		2
avr 7.3
(3) 		2.2
(-2.9) 		2.1
(-3) 		2.2
(-2.9) 		6.5
(2.1) 		3.2
(-1.7) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.7
(-2.8)
A 		4.1
(3)
A 		0.6
(-3)
A 		1.7
(-1.1)
A 		4
B 0.2
(-3)
A 		0.2
(-3)
A 		9
(3)
A 		2.4
(-1.5)
A 		9
C 0.3
(-3)
A 		0.9
(-2.5)
A 		1.1
(-2.4)
A 		7.7
(3)
P 		7
avr 0.4
(-3) 		1.7
(-0.8) 		3.6
(2.5) 		3.9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 3.4
(3)
A 		1.1
(-1.3)
A 		0.2
(-3)
A 		0.8
(-1.9)
A 		1.2
(-1.1)
A 		1.9
(0.2)
A 		3
B 0.5
(-2.7)
A 		0.8
(-2.3)
A 		0.8
(-2.3)
A 		0.2
(-3)
A 		5.4
(3)
A 		0.5
(-2.7)
A 		5
C 0.7
(2)
A 		0.4
(-1)
A 		0.5
(-0)
A 		0.5
(-0)
A 		0.8
(3)
A 		0.2
(-3)
A 		1
avr 1.5
(0) 		0.8
(-2.1) 		0.5
(-3) 		0.5
(-3) 		2.5
(3) 		0.9
(-1.8) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184371_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15690
Sequence Type Exemplar sequence
Representative Public ID C04E12.8 NCBI
Target Description C04E12.8 /REP_DB=WormBase Gene ID /WP=CE16821 /TR=O76680 /GB=AAC27094.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071538(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071538 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-121) (srx-121) mRNA, complete cds. 11/11 None
GENEFINDER00000029758 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3370768:3376899:-1 11/11 None
C04E12.8 ENSEMBL cdna:known chromosome:CEL140:V:3370768:3372560:-1 gene:C04E12.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029752 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3370767-3372560(-) 99.21 100.0
chrV:3295899-3297690(-) 90.14 90.14
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-121
Ensembl C04E12.8
Entrez Gene 182213 Entrez gene
SwissProt O76680 EMBL-EBI
WormBase CE16821 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC27094 Serpentine receptor, class x protein 121 [Caenorhabditis elegans] ref|NP_503939.1| Serpentine Receptor, class X family member (srx-121) [Caenorhabditis elegans] 0.0
blast AAF99934 Serpentine receptor, class x protein 122 [Caenorhabditis elegans] ref|NP_503912.2| Serpentine Receptor, class X family member (srx-122) [Caenorhabditis elegans] 1.0E-159
blast AAF99934 Serpentine receptor, class x protein 122 [Caenorhabditis elegans] ref|NP_503912.2| Serpentine Receptor, class X family member (srx-122) [Caenorhabditis elegans] 1.0E-158
blast CAB04431 Hypothetical protein F49C5.2 [Caenorhabditis elegans] ref|NP_496677.2| Serpentine Receptor, class X family member (srx-120) [Caenorhabditis elegans] 1.0E-152
blast CAB04431 Hypothetical protein F49C5.2 [Caenorhabditis elegans] ref|NP_496677.2| Serpentine Receptor, class X family member (srx-120) [Caenorhabditis elegans] 1.0E-151
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 3.7E-90
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 7.1
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503939.1 7 26-48,55-77,92-114,135-157,190-212,233-255,265-287
C04E12.8 7 26-48,55-77,92-114,135-157,190-212,233-255,265-287
GENEFINDER00000029758 13 15-36,48-70,85-107,181-203,235-254,304-323,376-398,405-427,442-464,485-507,540-562,583-605,615-637
Sequence
Target Sequence 
>C. ELEGANS:184371_AT
acttatcgcgatattttcatttgctgtgctacttccagaaggttgtcactacatattcga
ccgtgactatcttggatggattggtgaagtggaaccgtgcggaaaaatgactcagaagac
atttgtcattatcatggttggtgttactgctgtgactactttttgcagtgtgcttctgtt
tatcaagttggttttgtattcgcgcgaccctcatgtttccaacgcacaactagcgtatcg
acacaagaaaaatagacgattgataattcaagctattgtgcaaagtatcctcattataat
cgactcacttaactcttcaatcacttacaatatgtttccaaatttaatttttcaatttat
cactctctcgttttcgatggtgtttttaagaaccgtggaaggatttgtggtgttttctat
caataactccattaacgccgcagtgaaaaaaatgatagggattaaaacattggttcaaat
tgggaaaaaatgttttgttgcaaaaaattcaaactcaacgggaccgcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTATCGCGATATTTTCATTTGCT 366 103 450 Antisense
ACTACATATTCGACCGTGACTATCT 10 101 497 Antisense
GTTGGTGTTACTGCTGTGACTACTT 415 435 586 Antisense
GTGACTACTTTTTGCAGTGTGCTTC 127 483 601 Antisense
GCAGTGTGCTTCTGTTTATCAAGTT 50 311 614 Antisense
CAAGTTGGTTTTGTATTCGCGCGAC 558 183 633 Antisense
GCTATTGTGCAAAGTATCCTCATTA 590 303 721 Antisense
AACTCTTCAATCACTTACAATATGT 163 139 760 Antisense
TTCAATTTATCACTCTCTCGTTTTC 314 685 800 Antisense
CAATAACTCCATTAACGCCGCAGTG 531 179 870 Antisense
AAATTCAAACTCAACGGGACCGCAG 467 105 954 Antisense
Sequence Source Affymetrix Proprietary Database