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[184367_s_at]

Description Y43F11A.6 /REP_DB=WormBase Gene ID /WP=CE21918 /TR=Q9U2G9 /GB=CAB55042.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 7.5
(-3)
A 		8.4
(-2.5)
A 		14.1
(0.7)
A 		18.2
(3)
A 		11
B 5.9
(-1.7)
A 		2.7
(-3)
A 		3.3
(-2.8)
A 		17.3
(3)
A 		15
C 22.6
(3)
A 		2.9
(-2.7)
A 		1.9
(-3)
A 		22.5
(3)
A 		21
avr 12
(-0) 		4.7
(-3) 		6.4
(-2.3) 		19.3
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 30.9
(0.3)
A 		6.2
(-3)
A 		29.5
(0.1)
A 		51
(3)
A 		9.9
(-2.5)
A 		12.1
(-2.2)
A 		45
B 2.2
(-3)
A 		5.1
(-2.4)
A 		3.4
(-2.8)
A 		32.8
(3)
A 		12.9
(-0.9)
A 		3.3
(-2.8)
A 		31
C 2.4
(-3)
A 		11.2
(-0.8)
A 		7.2
(-1.8)
A 		5.2
(-2.3)
A 		20.7
(1.6)
A 		26.2
(3)
A 		24
avr 11.8
(-1.8) 		7.5
(-3) 		13.4
(-1.4) 		29.7
(3) 		14.5
(-1.1) 		13.9
(-1.3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.7
(-0.2)
A 		1.8
(-3)
A 		3.7
(3)
A 		2.7
(-0.2)
A 		2
B 1.9
(-0.6)
A 		0.7
(-3)
A 		0.8
(-2.8)
A 		3.7
(3)
A 		3
C 7.5
(3)
A 		0.8
(-2.9)
A 		0.7
(-3)
A 		3.8
(-0.3)
A 		7
avr 4
(3) 		1.1
(-3) 		1.7
(-1.8) 		3.4
(1.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 5.7
(-1)
A 		2.2
(-3)
A 		6.4
(-0.6)
A 		12.9
(3)
A 		3
(-2.6)
A 		2.9
(-2.6)
A 		11
B 0.8
(-3)
A 		1.7
(-2.3)
A 		0.8
(-3)
A 		8.7
(3)
A 		5.3
(0.4)
A 		1.2
(-2.7)
A 		8
C 0.9
(-3)
A 		3.4
(-1.1)
A 		1.8
(-2.3)
A 		1
(-2.9)
A 		6.7
(1.4)
A 		8.8
(3)
A 		8
avr 2.5
(-2.9) 		2.4
(-3) 		3
(-2.3) 		7.5
(3) 		5
(0.1) 		4.3
(-0.8) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184367_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2766
Sequence Type Exemplar sequence
Representative Public ID Y43F11A.6 NCBI
Target Description Y43F11A.6 /REP_DB=WormBase Gene ID /WP=CE21918 /TR=Q9U2G9 /GB=CAB55042.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000033625 ENSEMBL cdna:SNAP chromosome:CEL140:II:12131435:12132200:-1 11/11 None
GENEFINDER00000033634 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12131435:12132797:-1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12131431-12132794(-) 93.57 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T27114 hypothetical protein Y53C10A.1 - Caenorhabditis elegans 3.0E-62
blast T27114 hypothetical protein Y53C10A.1 - Caenorhabditis elegans 8.0E-59
blast AAC16990 Hypothetical protein B0205.1 [Caenorhabditis elegans] ref|NP_492805.2| B0205.1 [Caenorhabditis elegans] 7.0E-17
blast AAC16990 Hypothetical protein B0205.1 [Caenorhabditis elegans] ref|NP_492805.2| B0205.1 [Caenorhabditis elegans] 2.0E-16
blast CAB07289 Hypothetical protein T28A8.6 [Caenorhabditis elegans] ref|NP_499792.1| T28A8.6 [Caenorhabditis elegans] 1.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR006570 EMBL-EBI SPK 2.9E-9
Sequence
Target Sequence 
>C. ELEGANS:184367_S_AT
cggaaccagttgatcgaaccgcctacgacgaacttctcaacagacacaggtcgcgcaatc
cggaaatccaacaggctccaccagtgatcgcagaggcccgcaatcttgcaaatcccggat
ttgatgagccagagagaaaggagaatgtgcagctgatgaacgtgcagatggtcggtgcta
caactaatggatcaaactcggatggaatcagcctgcatcagctggtgaaacaattggagg
aaatgctcatctaccttgaaagtgatttcactggcttaaaagtcaaaattttgcgtttgt
tggcaatcagagatgagcaactcgatgcacaagacgtgatcctgtccttgaagttgttcc
tccttacaactacacgaaaattccgattgtccaccgaatccagtggctacccggactcat
cgaaaaagtgtggcaaggcgttcttgacgattctcaaatttgttctgctcaaattggagt
ctccactcattaacgattttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGAACCAGTTGATCGAACCGCCTA 526 241 254 Antisense
CGCCTACGACGAACTTCTCAACAGA 450 257 273 Antisense
TCAACAGACACAGGTCGCGCAATCC 105 631 290 Antisense
AATCCGGAAATCCAACAGGCTCCAC 667 165 310 Antisense
GAACGTGCAGATGGTCGGTGCTACA 33 349 411 Antisense
GGAATCAGCCTGCATCAGCTGGTGA 217 533 457 Antisense
GTGATCCTGTCCTTGAAGTTGTTCC 673 483 589 Antisense
TGTTCCTCCTTACAACTACACGAAA 265 559 608 Antisense
TGTCCACCGAATCCAGTGGCTACCC 335 557 641 Antisense
GGCAAGGCGTTCTTGACGATTCTCA 177 533 685 Antisense
GAGTCTCCACTCATTAACGATTTTC 95 401 730 Antisense
Sequence Source Affymetrix Proprietary Database