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[184366_at]

Description ZC204.11 /REP_DB=WormBase Gene ID /WP=CE15104 /TR=P91542 /GB=AAB37923.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 28      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 9.3
(1.5)
A 		11.2
(3)
A 		4.7
(-2)
A 		3.4
(-3)
A 		8
B 6.4
(-3)
A 		19
(3)
A 		10.9
(-0.9)
A 		13.8
(0.5)
A 		13
C 25.8
(1.1)
A 		13.5
(-1.1)
A 		2.5
(-3)
A 		37
(3)
A 		35
avr 13.8
(0.9) 		14.6
(1.3) 		6
(-3) 		18.1
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 15.4
(-2.3)
A 		30.2
(-0.9)
A 		7.4
(-3)
A 		72
(3)
A 		8.2
(-2.9)
A 		13.2
(-2.5)
A 		65
B 2.7
(-3)
A 		3.7
(-2.9)
A 		7.5
(-2.5)
A 		58.9
(3)
A 		34.3
(0.4)
A 		8.8
(-2.3)
A 		56
C 4.7
(-2.6)
A 		9
(-0.7)
A 		7.9
(-1.2)
A 		17.2
(3)
A 		7
(-1.6)
A 		3.9
(-3)
A 		13
avr 7.6
(-3) 		14.3
(-2) 		7.6
(-3) 		49.4
(3) 		16.5
(-1.7) 		8.6
(-2.9) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 3.4
(3)
A 		2.4
(0.9)
A 		1.2
(-1.6)
A 		0.5
(-3)
A 		3
B 2
(-3)
A 		4.7
(3)
A 		2.5
(-1.9)
A 		3
(-0.8)
A 		3
C 8.5
(3)
A 		3.9
(-0.6)
A 		0.9
(-3)
A 		6.2
(1.2)
A 		8
avr 4.6
(3) 		3.7
(1.3) 		1.5
(-3) 		3.2
(0.3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 2.8
(-2.6)
A 		10.7
(0.3)
A 		1.6
(-3)
A 		18.3
(3)
A 		2.5
(-2.7)
A 		3.2
(-2.4)
A 		17
B 1
(-3)
A 		1.2
(-2.9)
A 		1.8
(-2.7)
A 		15.6
(3)
A 		13.9
(2.3)
A 		3.3
(-2.1)
A 		15
C 1.8
(-1.6)
A 		2.7
(0.8)
A 		2
(-1.1)
A 		3.5
(3)
A 		2.3
(-0.3)
A 		1.3
(-3)
A 		2
avr 1.9
(-2.9) 		4.9
(-1.3) 		1.8
(-3) 		12.5
(3) 		6.2
(-0.5) 		2.6
(-2.6) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184366_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4553
Sequence Type Exemplar sequence
Representative Public ID ZC204.11 NCBI
Target Description ZC204.11 /REP_DB=WormBase Gene ID /WP=CE15104 /TR=P91542 /GB=AAB37923.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061626(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061626 NCBI Caenorhabditis elegans ZC204.11 (ZC204.11) mRNA, complete cds. 11/11 None
SNAP00000031413 ENSEMBL cdna:SNAP chromosome:CEL140:II:1653841:1654735:-1 11/11 None
GENEFINDER00000031432 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1653841:1654735:-1 11/11 None
ZC204.11 ENSEMBL cdna:known chromosome:CEL140:II:1653778:1654735:-1 gene:ZC204.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1653839-1654734(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC204.11
Entrez Gene 191115 Entrez gene
SwissProt P91542 EMBL-EBI
WormBase CE15104 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4289 subtilase activity inferred from electronic annotation QuickGO AmiGO
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37923 Hypothetical protein ZC204.11 [Caenorhabditis elegans] ref|NP_494027.1| ZC204.11 [Caenorhabditis elegans] 1.0E-126
blast AAB37923 Hypothetical protein ZC204.11 [Caenorhabditis elegans] ref|NP_494027.1| ZC204.11 [Caenorhabditis elegans] 1.0E-123
blast AAB37912 Hypothetical protein ZC204.3 [Caenorhabditis elegans] ref|NP_494028.2| ZC204.3 [Caenorhabditis elegans] 3.0E-56
blast AAB37912 Hypothetical protein ZC204.3 [Caenorhabditis elegans] ref|NP_494028.2| ZC204.3 [Caenorhabditis elegans] 3.0E-52
blast AAB71029 Hypothetical protein K02E7.9 [Caenorhabditis elegans] ref|NP_493902.1| K02E7.9 [Caenorhabditis elegans] 2.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.7E-19
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.7E-19
Sequence
Target Sequence 
>C. ELEGANS:184366_AT
agatttgcgtgggttggtgcggagccggtgtacggtttggccggtcacactccactagat
gaatatgagacaatgttcgccaagtcgaatagaacaaacgcggttctgatggttgatggg
aagaagcttcacgtgaacaaaacgcttctatccctccactctactcatttcaaaaaattg
ttccaatctgaaggagaccagcttccagtcgacaacatcagctacgaagatttcgctctt
ttgatcagcaccatccagccgaaccccatctatccaaatcacttcaccgcggaaaagatc
ctcgaattggctgtccgattccgcattccagctgcaactgcacttgttgaaaatcagctc
gtcaactacagctccttttctcatggaaaactgttgttgattgctgataagtacggattg
gagagacttttggaccagcaagtgcggaaaatatacacaaaggaggttgcagaggagctg
aagacgtgcgccgagttcccacagctttcggataat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATTTGCGTGGGTTGGTGCGGAGC 586 63 130 Antisense
TGCGGAGCCGGTGTACGGTTTGGCC 127 573 147 Antisense
CCGGTCACACTCCACTAGATGAATA 72 265 170 Antisense
CGTGAACAAAACGCTTCTATCCCTC 114 245 261 Antisense
TGAAGGAGACCAGCTTCCAGTCGAC 347 575 318 Antisense
GATTTCGCTCTTTTGATCAGCACCA 80 429 358 Antisense
ATCCAAATCACTTCACCGCGGAAAA 382 39 401 Antisense
ATTCCAGCTGCAACTGCACTTGTTG 335 7 454 Antisense
AATCAGCTCGTCAACTACAGCTCCT 146 171 481 Antisense
CAGAGGAGCTGAAGACGTGCGCCGA 549 205 599 Antisense
CGAGTTCCCACAGCTTTCGGATAAT 283 245 621 Antisense
Sequence Source Affymetrix Proprietary Database