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[184365_s_at]

Description Y48E1C.1B /REP_DB=WormBase Gene ID /WP=CE25311 /TR=Q9TW59 /GB=CAB61034.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 39      4grp_highest_8_8 > 47      4grp_high_8_8 > 20      6grp_highest_nonorm > 91      6grp_total > 39      4grp_total > 20      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 237.3
(0.6)
P 		183.7
(-3)
P 		187.8
(-2.7)
P 		272.5
(3)
P 		89
B 177
(-1.8)
P 		181.7
(-1.5)
P 		159.3
(-3)
P 		248.9
(3)
P 		90
C 208.3
(0.1)
P 		250.6
(1.6)
P 		119.3
(-3)
P 		291.4
(3)
P 		172
avr 207.5
(-0.3) 		205.3
(-0.4) 		155.5
(-3) 		270.9
(3) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 238.5
(3)
P 		180.1
(-0.4)
P 		153.1
(-2)
P 		135.4
(-3)
P 		215.2
(1.6)
P 		234.8
(2.8)
P 		103
B 233.4
(3)
P 		173
(-3)
P 		227.3
(2.4)
P 		205.5
(0.2)
P 		206.4
(0.3)
P 		218.9
(1.6)
P 		60
C 180.4
(-0.3)
P 		221.8
(3)
P 		146.7
(-3)
P 		181.4
(-0.2)
P 		199.2
(1.2)
P 		186.3
(0.2)
P 		75
avr 217.4
(3) 		191.6
(-0.6) 		175.7
(-2.8) 		174.1
(-3) 		206.9
(1.5) 		213.3
(2.4) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 86.4
(3)
P 		39.9
(-3)
P 		49.1
(-1.8)
P 		39.9
(-3)
P 		47
B 56.4
(3)
P 		44.9
(-0.5)
P 		36.9
(-3)
P 		53
(2)
P 		20
C 68.9
(2.4)
P 		72
(3)
P 		41.6
(-3)
P 		49.1
(-1.5)
P 		30
avr 70.6
(3) 		52.3
(-0.9) 		42.5
(-3) 		47.3
(-2) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 44
(-1)
P 		64.1
(2.8)
P 		33.3
(-3)
P 		34.3
(-2.8)
P 		64.9
(3)
P 		57.2
(1.5)
P 		32
B 81.2
(2.5)
P 		57.6
(-2.3)
P 		55.2
(-2.8)
P 		54.4
(-3)
P 		83.9
(3)
P 		81.6
(2.5)
P 		30
C 66.9
(2.8)
P 		67.7
(3)
P 		37.3
(-2.8)
P 		36.5
(-3)
P 		64.5
(2.4)
P 		62.4
(2)
P 		31
avr 64
(1.6) 		63.1
(1.4) 		41.9
(-3) 		41.7
(-3) 		71.1
(3) 		67.1
(2.2) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184365_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2756
Sequence Type Exemplar sequence
Representative Public ID Y48E1C.1B NCBI
Target Description Y48E1C.1B /REP_DB=WormBase Gene ID /WP=CE25311 /TR=Q9TW59 /GB=CAB61034.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064426(11), NM_064427(11), NM_182168(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064426 NCBI Caenorhabditis elegans Y48E1C.1b (Y48E1C.1) mRNA, complete cds. 11/11 None
NM_064427 NCBI Caenorhabditis elegans Y48E1C.1a (Y48E1C.1) mRNA, complete cds. 11/11 None
NM_182168 NCBI Caenorhabditis elegans Y48E1C.1c (Y48E1C.1) mRNA, complete cds. 9/11 None
SNAP00000029071 ENSEMBL cdna:SNAP chromosome:CEL140:II:13420396:13424252:1 11/11 None
GENEFINDER00000029077 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13421033:13424252:1 9/11 None
Y48E1C.1b ENSEMBL cdna:known chromosome:CEL140:II:13414922:13424332:1 gene:Y48E1C.1 11/11 None
Y48E1C.1c ENSEMBL cdna:known chromosome:CEL140:II:13414925:13424252:1 gene:Y48E1C.1 9/11 None
Y48E1C.1a ENSEMBL cdna:known chromosome:CEL140:II:13414925:13424252:1 gene:Y48E1C.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13414921-13424249(+) 99.39 100.0
Public Domain and Genome References
Ensembl Y48E1C.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB61043 Hypothetical protein Y48E1C.1b [Caenorhabditis elegans] emb|CAB61034.1| Hypothetical protein Y48E1C.1b [Caenorhabditis elegans] ref|NP_496827.1| Y48E1C.1b [Caenorhabditis elegans] 0.0
blast T31604 hypothetical protein Y48C3A.v - Caenorhabditis elegans 1.0E-163
blast CAB61044 Hypothetical protein Y48E1C.1a [Caenorhabditis elegans] emb|CAB61035.1| Hypothetical protein Y48E1C.1a [Caenorhabditis elegans] ref|NP_496828.1| Y48E1C.1a [Caenorhabditis elegans] 1.0E-160
blast CAB61044 Hypothetical protein Y48E1C.1a [Caenorhabditis elegans] emb|CAB61035.1| Hypothetical protein Y48E1C.1a [Caenorhabditis elegans] ref|NP_496828.1| Y48E1C.1a [Caenorhabditis elegans] 1.0E-148
blast CAB61043 Hypothetical protein Y48E1C.1b [Caenorhabditis elegans] emb|CAB61034.1| Hypothetical protein Y48E1C.1b [Caenorhabditis elegans] ref|NP_496827.1| Y48E1C.1b [Caenorhabditis elegans] 1.0E-148
Sequence
Target Sequence 
>C. ELEGANS:184365_S_AT
catttgatgcttttggaaccaccgggggcaatgattcgtcgtcgaaaacgataaccaaca
cctcctcactgctccgccaagccgaagagcaccgttcctcgattgtggagccgacgaagg
atcgcatcgaaaaagaacgtctcgatcgcctagttccagacgatgaggagttcgaaaacg
ccagcgtcgactctttcgacaatttcaacgcggagccagatccggctcctgcaccagctc
tggctccagttccagagaaaagaacatcggttttcagtaaaaaaatttgttcattcgact
ttgacgacgacgacggcgacgattcttttgatgagcccgttgtggtggtggccgaggttc
cgaaattgccagtgcagcagcagaaaacgccgaaagcttctggttcggagagcaaaaaga
aacccgaaaaacgaccggagtcttctacgccatcggtattttcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTTGATGCTTTTGGAACCACCGG 698 213 1784 Antisense
AACCACCGGGGGCAATGATTCGTCG 227 145 1800 Antisense
GTTCCTCGATTGTGGAGCCGACGAA 305 441 1877 Antisense
AAAAGAACGTCTCGATCGCCTAGTT 643 127 1914 Antisense
CGAAAACGCCAGCGTCGACTCTTTC 257 251 1956 Antisense
GACTCTTTCGACAATTTCAACGCGG 353 373 1972 Antisense
CAACGCGGAGCCAGATCCGGCTCCT 251 187 1989 Antisense
ACGACGACGGCGACGATTCTTTTGA 290 93 2090 Antisense
TGATGAGCCCGTTGTGGTGGTGGCC 542 565 2112 Antisense
TGGTGGCCGAGGTTCCGAAATTGCC 522 553 2129 Antisense
TCTTCTACGCCATCGGTATTTTCGA 128 615 2224 Antisense
Sequence Source Affymetrix Proprietary Database