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[184364_at]

Description Y56A3A.15 /REP_DB=WormBase Gene ID /WP=CE22582 /TR=Q9U231 /GB=CAB60509.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 18      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 33
(0.5)
A 		53.3
(3)
A 		4.1
(-3)
A 		50.6
(2.7)
A 		49
B 26.6
(-2.1)
A 		37
(-0.6)
A 		20.5
(-3)
A 		62.6
(3)
A 		42
C 11.1
(-3)
A 		13.8
(-2.8)
A 		44.6
(-0.7)
A 		100.1
(3)
A 		89
avr 23.6
(-2.9) 		34.7
(-1.6) 		23.1
(-3) 		71.1
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 73.1
(3)
A 		3.8
(-3)
A 		24.7
(-1.2)
A 		16.2
(-1.9)
A 		38
(-0)
A 		12.7
(-2.2)
A 		69
B 26
(-1.6)
A 		8.7
(-3)
A 		8.6
(-3)
A 		36.4
(-0.7)
A 		25.1
(-1.6)
A 		81
(3)
A 		72
C 18
(-2.7)
A 		14.6
(-3)
A 		39.7
(-0.6)
A 		17.8
(-2.7)
A 		25.7
(-1.9)
A 		76.5
(3)
A 		62
avr 39
(0.8) 		9
(-3) 		24.3
(-1.1) 		23.5
(-1.2) 		29.6
(-0.4) 		56.7
(3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 12
(3)
A 		11.6
(2.8)
A 		1.1
(-3)
A 		7.4
(0.5)
A 		11
B 8.5
(-0.4)
A 		9.1
(0)
A 		4.8
(-3)
A 		13.3
(3)
A 		9
C 3.7
(-3)
A 		4
(-2.9)
A 		15.6
(2.4)
A 		16.9
(3)
A 		13
avr 8.1
(-2) 		8.2
(-1.9) 		7.2
(-3) 		12.5
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 13.5
(3)
A 		1.4
(-3)
A 		5.4
(-1)
A 		4.1
(-1.7)
A 		11.5
(2)
A 		3.1
(-2.2)
A 		12
B 9
(-1.5)
A 		2.9
(-2.8)
A 		2.1
(-3)
A 		9.7
(-1.4)
A 		10.2
(-1.3)
A 		30.2
(3)
A 		28
C 6.7
(-2.2)
A 		4.5
(-2.8)
A 		10.1
(-1.2)
A 		3.6
(-3)
A 		8.3
(-1.7)
A 		25.6
(3)
A 		22
avr 9.7
(-0.6) 		2.9
(-3) 		5.9
(-1.9) 		5.8
(-2) 		10
(-0.4) 		19.6
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184364_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7518
Sequence Type Exemplar sequence
Representative Public ID Y56A3A.15 NCBI
Target Description Y56A3A.15 /REP_DB=WormBase Gene ID /WP=CE22582 /TR=Q9U231 /GB=CAB60509.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067146(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067146 NCBI Caenorhabditis elegans Y56A3A.15 (Y56A3A.15) mRNA, complete cds. 11/11 None
GENEFINDER00000035235 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11907405:11909765:1 11/11 None
SNAP00000035195 ENSEMBL cdna:SNAP chromosome:CEL140:III:11908844:11909765:1 11/11 None
Y56A3A.15 ENSEMBL cdna:known chromosome:CEL140:III:11908844:11909765:1 gene:Y56A3A.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11908839-11909761(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y56A3A.15
Entrez Gene 190328 Entrez gene
SwissProt Q9U231 EMBL-EBI
WormBase CE22582 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60509 Hypothetical protein Y56A3A.15 [Caenorhabditis elegans] ref|NP_499547.1| Y56A3A.15 [Caenorhabditis elegans] 1.0E-169
blast CAB60509 Hypothetical protein Y56A3A.15 [Caenorhabditis elegans] ref|NP_499547.1| Y56A3A.15 [Caenorhabditis elegans] 1.0E-168
blast CAB60508 Hypothetical protein Y56A3A.14 [Caenorhabditis elegans] ref|NP_499546.1| Y56A3A.14 [Caenorhabditis elegans] 1.0E-131
blast CAB60508 Hypothetical protein Y56A3A.14 [Caenorhabditis elegans] ref|NP_499546.1| Y56A3A.14 [Caenorhabditis elegans] 1.0E-129
blast CAB60522 Hypothetical protein Y56A3A.10 [Caenorhabditis elegans] ref|NP_499540.1| Y56A3A.10 [Caenorhabditis elegans] 1.0E-124
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.3E-7
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.3E-6
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.3E-7
Sequence
Target Sequence 
>C. ELEGANS:184364_AT
gaatgtaccgggattcactgtgaaacattggattgaacatgttgcttatgtactctgtag
gcacaactctattaaattggtcattttggaaccaaatattgacgaagtctacgaaattgt
gaaggatatgaaaacttttggagtgaaaattgcatcttcggaaatccaaagttctcacct
gctcgaactgttcccttctttaagtaatttgggcgtttacaatgtaccaatcaatactca
aatccttacacataacttctattggctagaattttttaagacaaaagtgacactcgacga
cattttggtttccaattgttcaaaattctcgatagaatacaacaatcttcccgacaagga
gttgaatctcttcatgagatcgtggataaaaggatctaattctcgtctcaaaactctgtc
aatctgttttggaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGTACCGGGATTCACTGTGAAA 708 329 309 Antisense
GAAAATTGCATCTTCGGAAATCCAA 571 353 453 Antisense
CGGAAATCCAAAGTTCTCACCTGCT 241 243 467 Antisense
AAAGTTCTCACCTGCTCGAACTGTT 216 123 476 Antisense
GGGCGTTTACAATGTACCAATCAAT 626 491 519 Antisense
AATACTCAAATCCTTACACATAACT 243 173 541 Antisense
CTTACACATAACTTCTATTGGCTAG 352 221 553 Antisense
GACACTCGACGACATTTTGGTTTCC 450 359 597 Antisense
GAATACAACAATCTTCCCGACAAGG 565 325 643 Antisense
CTAATTCTCGTCTCAAAACTCTGTC 529 225 704 Antisense
AACTCTGTCAATCTGTTTTGGAAGT 514 141 720 Antisense
Sequence Source Affymetrix Proprietary Database