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[184363_at]

Description F54D12.1 /REP_DB=WormBase Gene ID /WP=CE25903 /TR=O44835 /GB=AAB94992.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 6.2
(-3)
A 		7
(3)
A 		7
(3)
A 		6.5
(-0.8)
A 		1
B 4.1
(-0.8)
A 		3.4
(-3)
A 		4.8
(1.4)
A 		5.3
(3)
A 		2
C 5.9
(-2.6)
A 		5.3
(-3)
A 		5.9
(-2.6)
A 		14.2
(3)
A 		9
avr 5.4
(-2.7) 		5.2
(-3) 		5.9
(-1.8) 		8.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 60.5
(3)
A 		5.1
(-3)
A 		4.9
(-3)
A 		20.3
(-1.3)
A 		6.2
(-2.9)
A 		7.7
(-2.7)
A 		56
B 10.9
(3)
A 		6.3
(-0.3)
A 		8.8
(1.5)
A 		5.8
(-0.7)
A 		4.1
(-1.9)
A 		2.6
(-3)
A 		8
C 9.5
(0.1)
A 		3.8
(-2.7)
A 		15.5
(3)
A 		15
(2.8)
A 		6.4
(-1.4)
A 		3.2
(-3)
A 		12
avr 27
(3) 		5.1
(-2.8) 		9.7
(-1.6) 		13.7
(-0.5) 		5.6
(-2.7) 		4.5
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 2.3
(3)
A 		1.5
(-0.4)
A 		1.8
(0.9)
A 		0.9
(-3)
A 		1
B 1.3
(3)
A 		0.8
(-3)
A 		1.1
(0.6)
A 		1.1
(0.6)
A 		1
C 2
(0.3)
A 		1.5
(-3)
A 		2
(0.3)
A 		2.4
(3)
A 		1
avr 1.9
(3) 		1.3
(-3) 		1.6
(0) 		1.5
(-1) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 11.2
(3)
A 		1.8
(-2.6)
A 		1.1
(-3)
A 		5.1
(-0.6)
A 		1.9
(-2.5)
A 		1.9
(-2.5)
A 		10
B 3.8
(3)
A 		2.1
(-0.6)
A 		2.1
(-0.6)
A 		1.5
(-1.9)
A 		1.7
(-1.5)
A 		1
(-3)
A 		3
C 3.5
(2.1)
A 		1.2
(-2.8)
A 		3.9
(3)
A 		3
(1.1)
A 		2.1
(-0.9)
A 		1.1
(-3)
A 		3
avr 6.2
(3) 		1.7
(-2.5) 		2.4
(-1.7) 		3.2
(-0.7) 		1.9
(-2.3) 		1.3
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184363_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4456
Sequence Type Exemplar sequence
Representative Public ID F54D12.1 NCBI
Target Description F54D12.1 /REP_DB=WormBase Gene ID /WP=CE25903 /TR=O44835 /GB=AAB94992.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061562(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061562 NCBI Caenorhabditis elegans F54D12.1 (F54D12.1) mRNA, complete cds. 11/11 None
F54D12.1 ENSEMBL cdna:known chromosome:CEL140:II:1400411:1401377:1 gene:F54D12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1400409-1401376(+) 91.02 100.0
Public Domain and Genome References
Gene Title
Ensembl F54D12.1
Entrez Gene 186238 Entrez gene
SwissProt O44835 EMBL-EBI
WormBase CE25903 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94992 Hypothetical protein F54D12.1 [Caenorhabditis elegans] ref|NP_493963.3| F54D12.1 [Caenorhabditis elegans] 1.0E-161
blast AAR30205 Hypothetical protein F54D12.7 [Caenorhabditis elegans] ref|NP_493959.2| F54D12.7 [Caenorhabditis elegans] 2.0E-50
blast AAY55829 Hypothetical protein F54D12.10 [Caenorhabditis elegans] ref|NP_001022194.1| F54D12.10 [Caenorhabditis elegans] 2.0E-33
Sequence
Target Sequence 
>C. ELEGANS:184363_AT
gatgctaacgtggcccgaacaatgcacaaagcgatctgtagatatgttgctcggaattat
aaatccatataacacaaagaacataaagacgtacgaaattaagcttactccggaaaatgg
caactatgaaattgaatacgtgtactccatcaccagtaactgtaaagattggttgaagcc
tacgcctacgtgtcaggactgccctgtcaccatgttcagcttcaccggtatgtttttcgc
gtaccaaggctctacatttacaccgattgtctcgagtaaagagtcatggagggagtgttt
gttcacgtgctacttgaataaaaactgtatggcggcttcggtgaatgtcgacggttactg
taacagctgggactatggaattcttacttcgtgggatgccacgcctgcgagtcttccggt
ccttggaacgaggctgccgtatttggcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCTAACGTGGCCCGAACAATGC 144 413 285 Antisense
ATTGAATACGTGTACTCCATCACCA 506 5 415 Antisense
AAGATTGGTTGAAGCCTACGCCTAC 622 151 449 Antisense
TCAGCTTCACCGGTATGTTTTTCGC 647 623 500 Antisense
TATGTTTTTCGCGTACCAAGGCTCT 44 655 513 Antisense
CCAAGGCTCTACATTTACACCGATT 343 277 528 Antisense
GGGAGTGTTTGTTCACGTGCTACTT 247 491 575 Antisense
TGGCGGCTTCGGTGAATGTCGACGG 376 539 614 Antisense
GAATTCTTACTTCGTGGGATGCCAC 453 323 662 Antisense
GTCTTCCGGTCCTTGGAACGAGGCT 160 469 695 Antisense
GAACGAGGCTGCCGTATTTGGCATT 369 347 710 Antisense
Sequence Source Affymetrix Proprietary Database