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[184362_at]

Description Y113G7A.1 /REP_DB=WormBase Gene ID /WP=CE23273 /TR=Q9U2Z3 /GB=CAB60474.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 17      4grp_total > 05      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 16.2
(-2.3)
A 		5.8
(-3)
A 		48.2
(-0.3)
A 		101.2
(3)
A 		95
B 66.2
(3)
A 		35.5
(-1.1)
A 		21.8
(-3)
A 		45.8
(0.2)
A 		44
C 55.7
(3)
P 		52.6
(2.4)
A 		26.5
(-3)
A 		49.9
(1.8)
A 		29
avr 46
(-0.4) 		31.3
(-3) 		32.2
(-2.8) 		65.6
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 36.1
(-0.1)
A 		15.6
(-3)
A 		58.6
(3)
A 		27.5
(-1.3)
A 		31.4
(-0.8)
A 		31.8
(-0.7)
A 		43
B 40
(3)
A 		32.3
(1.8)
A 		31.7
(1.7)
A 		2
(-3)
A 		15
(-0.9)
A 		30.1
(1.4)
A 		38
C 55.8
(3)
A 		38.4
(1)
A 		2.7
(-3)
A 		8.2
(-2.4)
A 		32.1
(0.3)
A 		19.6
(-1.1)
A 		53
avr 44
(3) 		28.8
(0.1) 		31
(0.5) 		12.6
(-3) 		26.2
(-0.4) 		27.2
(-0.2) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 5.9
(-1)
A 		1.3
(-3)
A 		12.6
(2)
A 		14.8
(3)
A 		14
B 21.1
(3)
A 		8.8
(-1.6)
A 		5.1
(-3)
A 		9.8
(-1.2)
A 		16
C 18.4
(3)
P 		15.1
(1)
A 		9.2
(-2.5)
A 		8.4
(-3)
A 		10
avr 15.1
(3) 		8.4
(-3) 		9
(-2.5) 		11
(-0.7) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 6.7
(-2)
A 		5.5
(-3)
A 		12.8
(3)
A 		7
(-1.8)
A 		9.5
(0.3)
A 		7.7
(-1.2)
A 		7
B 13.9
(3)
A 		10.7
(1.6)
A 		7.7
(0.2)
A 		0.5
(-3)
A 		6.1
(-0.5)
A 		11.2
(1.8)
A 		13
C 20.7
(3)
A 		11.7
(0.3)
A 		0.7
(-3)
A 		1.6
(-2.7)
A 		10.4
(-0.1)
A 		6.6
(-1.2)
A 		20
avr 13.8
(3) 		9.3
(0.5) 		7.1
(-0.7) 		3
(-3) 		8.7
(0.2) 		8.5
(0.1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184362_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13101
Sequence Type Exemplar sequence
Representative Public ID Y113G7A.1 NCBI
Target Description Y113G7A.1 /REP_DB=WormBase Gene ID /WP=CE23273 /TR=Q9U2Z3 /GB=CAB60474.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075471(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075471 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-233) (srh-233) mRNA, complete cds. 11/11 None
GENEFINDER00000016729 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20047379:20050735:1 9/11 None
Y113G7A.1 ENSEMBL cdna:known chromosome:CEL140:V:20047379:20050562:1 gene:Y113G7A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016722 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20047378-20050562(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-233
Ensembl Y113G7A.1
Entrez Gene 190957 Entrez gene
SwissProt Q9U2Z3 EMBL-EBI
WormBase CE23273 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60474 Hypothetical protein Y113G7A.1 [Caenorhabditis elegans] ref|NP_507872.1| Serpentine Receptor, class H family member (srh-233) [Caenorhabditis elegans] 0.0
blast CAB60474 Hypothetical protein Y113G7A.1 [Caenorhabditis elegans] ref|NP_507872.1| Serpentine Receptor, class H family member (srh-233) [Caenorhabditis elegans] 1.0E-165
blast CAB04854 Hypothetical protein T26H5.3 [Caenorhabditis elegans] ref|NP_506842.1| Serpentine Receptor, class H family member (srh-239) [Caenorhabditis elegans] 1.0E-133
blast NP_504982 Serpentine Receptor, class H family member (srh-234) [Caenorhabditis elegans] gb|AAG24047.2| Serpentine receptor, class h protein 234 [Caenorhabditis elegans] 1.0E-132
blast CAB04854 Hypothetical protein T26H5.3 [Caenorhabditis elegans] ref|NP_506842.1| Serpentine Receptor, class H family member (srh-239) [Caenorhabditis elegans] 1.0E-114
blast NP_504982 Serpentine Receptor, class H family member (srh-234) [Caenorhabditis elegans] gb|AAG24047.2| Serpentine receptor, class h protein 234 [Caenorhabditis elegans] 1.0E-113
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.5E-103
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.3E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507872.1 7 15-37,58-80,90-112,133-152,193-215,236-258,268-290
Y113G7A.1 7 15-37,58-80,90-112,133-152,193-215,236-258,268-290
GENEFINDER00000016729 7 15-37,58-80,90-112,133-152,205-227,234-256,276-298
Sequence
Target Sequence 
>C. ELEGANS:184362_AT
taccgttatactacatgccattacagtttttcatccctgaacaggaatccggaagggaaa
tttcgtgggcgctgctcgactgtatccccgagctcccaagagatggccgtgagcttttcg
ttctggccactaatctaaaaggcccgggcctgacaatcttcatatccgagattcttccga
tagttcaatgtggtacatttgtcagtcttaatttatataatttaactatagcgagaccaa
gtggaatgtcgaaaaagactattcaaatgcaacatttattgatttttgcgttgattcttc
aggcctcagtgaacacattcctattcatagtacccgtcaacgcagtaatatacatagtat
atatccatcaccaaaatcaattgctcaacaatttaattgtattctgcctggcttttcatg
gtattgtatctactcttatcatgatatttgctcataagccatatcgggacttcacccttc
tcccagtgaagtactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCGTTATACTACATGCCATTACA 699 649 434 Antisense
GCCATTACAGTTTTTCATCCCTGAA 164 275 450 Antisense
AAGAGATGGCCGTGAGCTTTTCGTT 130 155 531 Antisense
TTTTCGTTCTGGCCACTAATCTAAA 448 677 548 Antisense
CCGGGCCTGACAATCTTCATATCCG 591 265 577 Antisense
ATTTTTGCGTTGATTCTTCAGGCCT 306 15 715 Antisense
TCAGGCCTCAGTGAACACATTCCTA 230 623 732 Antisense
TATTCATAGTACCCGTCAACGCAGT 679 657 755 Antisense
ATTCTGCCTGGCTTTTCATGGTATT 559 9 834 Antisense
TAAGCCATATCGGGACTTCACCCTT 695 637 888 Antisense
TCACCCTTCTCCCAGTGAAGTACTT 458 625 905 Antisense
Sequence Source Affymetrix Proprietary Database