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[184361_at]

Description Y17G9B.1 /REP_DB=WormBase Gene ID /WP=CE24181 /TR=Q9N572 /GB=AAF60443.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 24      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 8.9
(-3)
A 		71.8
(1.4)
A 		44.4
(-0.5)
A 		94.8
(3)
A 		86
B 57.8
(2.5)
A 		57.9
(2.5)
A 		59.1
(3)
A 		44.1
(-3)
A 		15
C 19.4
(-2.4)
A 		13.8
(-3)
A 		74.8
(3)
P 		72.1
(2.7)
P 		61
avr 28.7
(-3) 		47.8
(-0.2) 		59.4
(1.4) 		70.3
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 31.4
(-2.2)
A 		27
(-2.8)
P 		31.2
(-2.2)
A 		25.9
(-3)
A 		51.4
(0.8)
A 		65.9
(3)
M 		40
B 29.2
(1.6)
A 		34.2
(3)
P 		32.4
(2.5)
A 		27.3
(1)
A 		23.1
(-0.2)
A 		13.2
(-3)
A 		21
C 25.6
(-2)
A 		57.7
(3)
A 		33.5
(-0.7)
A 		21.4
(-2.6)
A 		18.8
(-3)
A 		52.8
(2.2)
P 		39
avr 28.7
(-1.8) 		39.6
(1.6) 		32.4
(-0.6) 		24.9
(-3) 		31.1
(-1.1) 		44
(3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 3.2
(-3)
A 		15.6
(3)
A 		11.6
(1.1)
A 		13.9
(2.2)
A 		12
B 18.4
(3)
A 		14.3
(0.3)
A 		13.7
(-0.1)
A 		9.4
(-3)
A 		9
C 6.4
(-2.3)
A 		4
(-3)
A 		26.1
(3)
P 		12.2
(-0.8)
P 		22
avr 9.3
(-3) 		11.3
(-1.5) 		17.1
(3) 		11.8
(-1.1) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 5.8
(-3)
A 		9.6
(-0.8)
P 		6.8
(-2.4)
A 		6.6
(-2.5)
A 		15.5
(2.7)
A 		16
(3)
M 		10
B 10.2
(1.9)
A 		11.4
(3)
P 		7.9
(-0.2)
A 		7.2
(-0.9)
A 		9.4
(1.2)
A 		4.9
(-3)
A 		7
C 9.5
(-0.7)
A 		17.6
(3)
A 		8.5
(-1.1)
A 		4.3
(-3)
A 		6.1
(-2.2)
A 		17.7
(3)
P 		13
avr 8.5
(-0.8) 		12.9
(3) 		7.7
(-1.5) 		6
(-3) 		10.3
(0.7) 		12.9
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184361_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10845
Sequence Type Exemplar sequence
Representative Public ID Y17G9B.1 NCBI
Target Description Y17G9B.1 /REP_DB=WormBase Gene ID /WP=CE24181 /TR=Q9N572 /GB=AAF60443.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068238(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068238 NCBI Caenorhabditis elegans Y17G9B.1 (Y17G9B.1) mRNA, complete cds. 10/11 None
SNAP00000043801 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4764715:4767796:1 11/11 None
GENEFINDER00000043813 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4764715:4767796:1 10/11 None
Y17G9B.1 ENSEMBL cdna:known chromosome:CEL140:IV:4764739:4767830:1 gene:Y17G9B.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4764744-4767802(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y17G9B.1
Entrez Gene 189466 Entrez gene
SwissProt Q9N572 EMBL-EBI
WormBase CE34605 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500639 Y17G9B.1 [Caenorhabditis elegans] gb|AAF60443.2| Hypothetical protein Y17G9B.1 [Caenorhabditis elegans] 0.0
blast CAE74728 Hypothetical protein CBG22546 [Caenorhabditis briggsae] 6.0E-80
blast CAE74728 Hypothetical protein CBG22546 [Caenorhabditis briggsae] 1.0E-78
blast CAE74728 Hypothetical protein CBG22546 [Caenorhabditis briggsae] 1.0E-72
blast CAA22109 Hypothetical protein Y75B8A.25 [Caenorhabditis elegans] ref|NP_499597.1| Y75B8A.25 [Caenorhabditis elegans] 6.0E-59
Sequence
Target Sequence 
>C. ELEGANS:184361_AT
gaacatcatcggaagcttgtgctcaaatactcaactacttcaaaactttattacaaaagc
aagaagttcaagtactcggaggatatgcccctgtacttcaactgaaaactaataaagata
ttgaatatgccagtttatgcattgtgcataactatgtcatactggccgaacgcgacgaaa
gcctaataccattgatatcaagtcatattacacgattatcagtattttatggatatattg
aacaagttttctgtattatattactgagcagatcagcccttttacggcaacatccggagg
aatacgcctactgcttctcgaaaggattcaaattgaagctaaccgacgaaattctatgga
aatacgtggatgcttcgacggctcatattctagaaattccaaggggatcgttcattcttt
ggcaactgataacgacctgcaaacctcgtctccaagtcgacaaggaacgatggatacagc
tgcttttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACATCATCGGAAGCTTGTGCTCA 710 349 749 Antisense
GTGCTCAAATACTCAACTACTTCAA 709 479 767 Antisense
AGTACTCGGAGGATATGCCCCTGTA 472 61 819 Antisense
TATGCCCCTGTACTTCAACTGAAAA 349 657 832 Antisense
CATACTGGCCGAACGCGACGAAAGC 366 199 906 Antisense
GATCAGCCCTTTTACGGCAACATCC 344 419 1019 Antisense
TCCGGAGGAATACGCCTACTGCTTC 204 595 1041 Antisense
TACGTGGATGCTTCGACGGCTCATA 44 649 1111 Antisense
CAAGGGGATCGTTCATTCTTTGGCA 633 183 1148 Antisense
ACCTCGTCTCCAAGTCGACAAGGAA 132 89 1191 Antisense
GGAACGATGGATACAGCTGCTTTTG 71 531 1212 Antisense
Sequence Source Affymetrix Proprietary Database