[Home] | [Total List]

[184360_at]

Description C15B12.2 /REP_DB=WormBase Gene ID /WP=CE02484 /TR=Q18003 /GB=AAK39160.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 57.7
(-1.7)
A 		44
(-3)
A 		51.6
(-2.3)
A 		108.7
(3)
A 		65
B 78.2
(3)
A 		10.7
(-3)
A 		24.5
(-1.8)
A 		44.4
(-0)
A 		68
C 30.8
(-2.8)
A 		27.3
(-3)
A 		49.3
(-1.5)
A 		112.8
(3)
A 		86
avr 55.6
(-0.2) 		27.3
(-3) 		41.8
(-1.6) 		88.6
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 5.7
(-3)
A 		49.5
(0.6)
A 		33.2
(-0.7)
A 		36.8
(-0.4)
A 		78.9
(3)
A 		5.4
(-3)
A 		74
B 38.4
(0.3)
A 		54.4
(2.1)
A 		45
(1)
A 		19.9
(-1.7)
A 		63
(3)
A 		8.1
(-3)
A 		55
C 35.1
(-0)
A 		62.8
(2.9)
A 		8.5
(-2.9)
A 		63.4
(3)
A 		15.8
(-2.1)
A 		7.1
(-3)
A 		56
avr 26.4
(-0.6) 		55.6
(3) 		28.9
(-0.3) 		40
(1.1) 		52.6
(2.6) 		6.9
(-3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 21
(3)
A 		9.6
(-3)
A 		13.5
(-0.9)
A 		15.9
(0.3)
A 		11
B 25
(3)
A 		2.6
(-3)
A 		5.7
(-2.2)
A 		9.5
(-1.2)
A 		22
C 10.2
(-1.7)
A 		7.8
(-3)
A 		17.2
(2)
A 		19
(3)
A 		11
avr 18.7
(3) 		6.7
(-3) 		12.1
(-0.3) 		14.8
(1.1) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 1.1
(-3)
A 		17.6
(1.4)
A 		7.2
(-1.4)
A 		9.3
(-0.8)
A 		23.8
(3)
A 		1.3
(-2.9)
A 		23
B 13.4
(-0.2)
A 		18.1
(1)
A 		10.9
(-0.9)
A 		5.3
(-2.4)
A 		25.6
(3)
A 		3
(-3)
A 		23
C 13
(0.8)
A 		19.2
(3)
A 		2.2
(-3)
A 		12.8
(0.7)
A 		5.1
(-2)
A 		2.4
(-2.9)
A 		17
avr 9.2
(-0.4) 		18.3
(3) 		6.8
(-1.3) 		9.1
(-0.4) 		18.2
(3) 		2.2
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184360_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16255
Sequence Type Exemplar sequence
Representative Public ID C15B12.2 NCBI
Target Description C15B12.2 /REP_DB=WormBase Gene ID /WP=CE02484 /TR=Q18003 /GB=AAK39160.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076688(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076688 NCBI Caenorhabditis elegans C15B12.2 (C15B12.2) mRNA, complete cds. 11/11 None
GENEFINDER00000029097 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6463079:6466143:1 11/11 None
C15B12.2 ENSEMBL cdna:known chromosome:CEL140:X:6464437:6465686:1 gene:C15B12.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029078 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6464436-6465686(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C15B12.2
Entrez Gene 182627 Entrez gene
SwissProt Q18003 EMBL-EBI
WormBase CE02484 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39160 Hypothetical protein C15B12.2 [Caenorhabditis elegans] ref|NP_509089.1| C15B12.2 [Caenorhabditis elegans] 1.0E-159
blast AAK39160 Hypothetical protein C15B12.2 [Caenorhabditis elegans] ref|NP_509089.1| C15B12.2 [Caenorhabditis elegans] 1.0E-131
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509089.1 2 61-83,103-125
C15B12.2 2 61-83,103-125
GENEFINDER00000029097 2 174-196,216-238
Sequence
Target Sequence 
>C. ELEGANS:184360_AT
ggtacatactcactttcataacttatcttgtttggacattacttttatggattccttgct
tgtatcattacacttgtcgccacaatagtttttatcatcgacacaagctatgcaggtcgt
ttataagatatttctcagtcacattccactactccattttctatttgtcattgttatcct
ctgcttttttaattggactgaatatcaccttactgtcttctgtacacggtcttggatcca
actcaatgcctccggagattgatagggtaactattcctatagttcagattgaacacatag
ctttgtatcagatttgtgttactgtgtctccggaatcacatatgatctacaccaatattt
tgccttcctccccatttgaaagtgcactacaattgtggaaacgacttaacaaagaaaatg
caccaaacgatccaacagccgtaacagaatgcaaacctttgtgggaagacggtgggctag
gaatcggattagcaagaagagaagctggagtttgggagatgagaacaaagatcaataata
caatgctggaccatagttccatcggtagttcagctaagctggccgtatttctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTACATACTCACTTTCATAACTTA 299 505 200 Antisense
TGTATCATTACACTTGTCGCCACAA 256 561 260 Antisense
GATATTTCTCAGTCACATTCCACTA 316 427 326 Antisense
CATTGTTATCCTCTGCTTTTTTAAT 625 215 368 Antisense
GAATATCACCTTACTGTCTTCTGTA 21 327 399 Antisense
GTCTTCTGTACACGGTCTTGGATCC 241 469 414 Antisense
TTGTGTTACTGTGTCTCCGGAATCA 156 707 513 Antisense
TCTACACCAATATTTTGCCTTCCTC 542 613 545 Antisense
CTTCCTCCCCATTTGAAAGTGCACT 27 219 563 Antisense
TGCACCAAACGATCCAACAGCCGTA 708 575 618 Antisense
TTCAGCTAAGCTGGCCGTATTTCTC 81 687 768 Antisense
Sequence Source Affymetrix Proprietary Database