[Home] | [Total List]

[184359_at] 7TM chemoreceptor, srw family

Description Y75B12B.7 /REP_DB=WormBase Gene ID /WP=CE20376 /TR=Q9XWB6 /GB=CAA21766.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 27      6grp_cgc > 53      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 55.1
(2)
A 		63.3
(3)
A 		15.9
(-3)
A 		59.7
(2.5)
A 		47
B 58.2
(1.1)
A 		63.2
(2)
A 		68.6
(3)
A 		36.5
(-3)
A 		32
C 15.6
(-2.7)
A 		48.8
(-0.7)
A 		9.9
(-3)
A 		113.5
(3)
A 		104
avr 43
(-1.2) 		58.4
(1.2) 		31.5
(-3) 		69.9
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 10.1
(-2.5)
A 		51.2
(1.7)
A 		64.5
(3)
A 		33.1
(-0.2)
A 		55.8
(2.1)
A 		5.1
(-3)
A 		59
B 58.1
(3)
A 		47.4
(1)
A 		35.1
(-1.2)
A 		25.3
(-3)
A 		43.1
(0.3)
A 		29.1
(-2.3)
A 		33
C 38.3
(-0)
A 		70.5
(3)
A 		33.8
(-0.4)
A 		12.8
(-2.4)
A 		6.3
(-3)
A 		27.1
(-1.1)
A 		64
avr 35.5
(-0.5) 		56.4
(3) 		44.5
(1) 		23.7
(-2.5) 		35.1
(-0.6) 		20.4
(-3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 20.1
(3)
A 		13.7
(0.6)
A 		4.2
(-3)
A 		8.7
(-1.3)
A 		16
B 18.6
(3)
A 		15.6
(1.3)
A 		15.9
(1.5)
A 		7.8
(-3)
A 		11
C 5.2
(-2.3)
A 		14
(1.1)
A 		3.4
(-3)
A 		19.1
(3)
A 		16
avr 14.6
(3) 		14.4
(2.8) 		7.8
(-3) 		11.9
(0.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 1.9
(-2.8)
A 		18.2
(3)
A 		14
(1.5)
A 		8.4
(-0.5)
A 		16.8
(2.5)
A 		1.2
(-3)
A 		17
B 20.2
(3)
A 		15.8
(1)
A 		8.5
(-2.2)
A 		6.7
(-3)
A 		17.5
(1.8)
A 		10.9
(-1.1)
A 		14
C 14.2
(0.8)
A 		21.5
(3)
A 		8.6
(-1)
A 		2.6
(-2.8)
A 		2
(-3)
A 		9.1
(-0.8)
A 		20
avr 12.1
(-0) 		18.5
(3) 		10.4
(-0.9) 		5.9
(-3) 		12.1
(-0) 		7.1
(-2.4) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184359_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14145
Sequence Type Exemplar sequence
Representative Public ID Y75B12B.7 NCBI
Target Description Y75B12B.7 /REP_DB=WormBase Gene ID /WP=CE20376 /TR=Q9XWB6 /GB=CAA21766.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074352(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074352 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-1) (srw-1) mRNA, complete cds. 10/11 None
SNAP00000027062 ENSEMBL cdna:SNAP chromosome:CEL140:V:15200997:15201982:1 10/11 None
GENEFINDER00000027065 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15195309:15203807:1 11/11 None
Y75B12B.7 ENSEMBL cdna:known chromosome:CEL140:V:15200841:15201982:1 gene:Y75B12B.7 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15200840-15203807(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-1
Ensembl Y75B12B.7
Entrez Gene 190719 Entrez gene
SwissProt Q9XWB6 EMBL-EBI
WormBase CE33899 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21765 Hypothetical protein Y75B12B.6 [Caenorhabditis elegans] ref|NP_506752.1| PhosphoLipase C family member (plc-2) [Caenorhabditis elegans] 0.0
blast CAE71603 Hypothetical protein CBG18562 [Caenorhabditis briggsae] 0.0
blast CAA21766 Hypothetical protein Y75B12B.7 [Caenorhabditis elegans] ref|NP_506753.2| Serpentine Receptor, class W family member (srw-1) [Caenorhabditis elegans] 1.0E-163
blast CAA21766 Hypothetical protein Y75B12B.7 [Caenorhabditis elegans] ref|NP_506753.2| Serpentine Receptor, class W family member (srw-1) [Caenorhabditis elegans] 1.0E-132
blast CAA21766 Hypothetical protein Y75B12B.7 [Caenorhabditis elegans] ref|NP_506753.2| Serpentine Receptor, class W family member (srw-1) [Caenorhabditis elegans] 2.0E-90
blast CAE71608 Hypothetical protein CBG18568 [Caenorhabditis briggsae] 1.0E-52
blast CAE71608 Hypothetical protein CBG18568 [Caenorhabditis briggsae] 7.0E-40
blast CAE71611 Hypothetical protein CBG18572 [Caenorhabditis briggsae] 8.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR000909 EMBL-EBI Phosphatidylinositol-specific phospholipase C, X domain 5.9E-55
Pfam IPR001711 EMBL-EBI Phosphatidylinositol-specific phospholipase C, Y domain 1.8E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506753.2 6 20-41,48-67,104-126,147-164,212-234,255-277
Y75B12B.7 6 20-41,48-67,104-126,147-164,212-234,255-277
SNAP00000027062 4 52-74,95-112,160-182,203-225
GENEFINDER00000027065 2 1027-1049,1070-1092
Sequence
Target Sequence 
>C. ELEGANS:184359_AT
atctctccgcaacacatttcaagtacaaaatcacacctaaatctgatgacgcattctgtg
cattcagcttctatactggagcaagctctgaaaggcgactgtactccgcctcggatggac
attccagtaccaatgcaattctactttttactcttttcgacgggctcattcaaatatttc
agctaatcgttttcatttttacttcccttattctatcgagattcataaaagaagcatcta
gcatgaaaatgatgaaaagcaaaagtgacagacaagctgaaaaaacagaagggcttatac
tattcacactttgctcatttttcatctcaacgtttccaattataattgcaaacttcatgt
tgccactattcgcaaatctacagatcataccattaatccttatcagaacccttaccatat
caaccatgttacaaaccataaacgcagctactcacggatgggtctgtcttctgatgtcat
cgcaatatcgagccgtggcgaaaacggcgttctctcctgatcacagcgttaatgcggtcc
ttgcaacaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTCTCCGCAACACATTTCAAGTA 191 33 485 Antisense
TGACGCATTCTGTGCATTCAGCTTC 644 569 531 Antisense
TACTCCGCCTCGGATGGACATTCCA 215 647 586 Antisense
TTTTTACTCTTTTCGACGGGCTCAT 232 675 629 Antisense
TTTTACTTCCCTTATTCTATCGAGA 224 675 681 Antisense
GGGCTTATACTATTCACACTTTGCT 194 493 775 Antisense
CAAACTTCATGTTGCCACTATTCGC 277 191 833 Antisense
ATCAGAACCCTTACCATATCAACCA 250 27 886 Antisense
TAAACGCAGCTACTCACGGATGGGT 57 637 923 Antisense
GTTCTCTCCTGATCACAGCGTTAAT 221 443 993 Antisense
GCGTTAATGCGGTCCTTGCAACACA 266 289 1010 Antisense
Sequence Source Affymetrix Proprietary Database