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[184358_at]

Description Y59A8B.21 /REP_DB=WormBase Gene ID /WP=CE26211 /TR=Q9GRY3 /GB=CAC14416.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 21      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 117.6
(1.6)
A 		62.8
(-2.1)
A 		49.2
(-3)
A 		137.5
(3)
M 		88
B 87.9
(3)
A 		83.8
(2.6)
A 		31.1
(-3)
A 		77.9
(1.9)
A 		57
C 73.3
(-0.5)
A 		54.3
(-2.7)
A 		52
(-3)
A 		102.7
(3)
A 		51
avr 92.9
(1.7) 		67
(-0.8) 		44.1
(-3) 		106
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 67
(0.8)
A 		10.5
(-3)
A 		65.3
(0.6)
A 		47.1
(-0.6)
A 		67.5
(0.8)
A 		100.7
(3)
A 		90
B 32.1
(-3)
A 		42.2
(-2.2)
A 		56.4
(-1)
A 		61.3
(-0.6)
A 		48.6
(-1.7)
A 		106.5
(3)
A 		74
C 41.6
(-1.5)
A 		48.7
(-1)
A 		43.8
(-1.3)
A 		78.6
(1.3)
A 		21.9
(-3)
A 		101.1
(3)
A 		79
avr 46.9
(-1.9) 		33.8
(-3) 		55.2
(-1.1) 		62.3
(-0.5) 		46
(-1.9) 		102.8
(3) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 42.8
(3)
A 		13.6
(-2.9)
A 		12.9
(-3)
A 		20.1
(-1.6)
M 		30
B 28
(3)
A 		20.7
(0.9)
A 		7.2
(-3)
A 		16.6
(-0.3)
A 		21
C 24.3
(3)
A 		15.6
(-3)
A 		18.1
(-1.3)
A 		17.3
(-1.8)
A 		9
avr 31.7
(3) 		16.6
(-1.8) 		12.7
(-3) 		18
(-1.3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 12.4
(-0.5)
A 		3.7
(-3)
A 		14.2
(0)
A 		11.9
(-0.6)
A 		20.4
(1.8)
A 		24.5
(3)
A 		21
B 11.2
(-3)
A 		14.1
(-2.4)
A 		13.7
(-2.5)
A 		16.2
(-1.9)
A 		19.7
(-1.2)
A 		39.7
(3)
A 		29
C 15.4
(-1.1)
A 		14.9
(-1.2)
A 		11.1
(-2.1)
A 		15.8
(-1)
A 		7.1
(-3)
A 		33.8
(3)
A 		27
avr 13
(-2.4) 		10.9
(-3) 		13
(-2.4) 		14.6
(-2) 		15.7
(-1.7) 		32.7
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184358_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14119
Sequence Type Exemplar sequence
Representative Public ID Y59A8B.21 NCBI
Target Description Y59A8B.21 /REP_DB=WormBase Gene ID /WP=CE26211 /TR=Q9GRY3 /GB=CAC14416.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075118(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075118 NCBI Caenorhabditis elegans Y59A8B.21 (Y59A8B.21) mRNA, complete cds. 11/11 None
Y59A8B.21 ENSEMBL cdna:known chromosome:CEL140:V:17989468:17996838:1 gene:Y59A8B.21 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000028714 3/11 Cross Hyb Matching Probes None
GENEFINDER00000028729 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17988852-17996838(+) 87.12 100.0
Public Domain and Genome References
Gene Title
Ensembl Y59A8B.21
Entrez Gene 190398 Entrez gene
SwissProt Q9GRY3 EMBL-EBI
WormBase CE28872 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6306 DNA methylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
8170 N-methyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC14416 Hypothetical protein Y59A8B.21 [Caenorhabditis elegans] ref|NP_507519.1| Y59A8B.21 [Caenorhabditis elegans] 0.0
blast CAE61698 Hypothetical protein CBG05646 [Caenorhabditis briggsae] 0.0
blast NP_494834 F10G7.5 [Caenorhabditis elegans] gb|AAA81125.2| Hypothetical protein F10G7.5 [Caenorhabditis elegans] 2.0E-46
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507519.1 9 22-44,51-70,74-96,108-130,196-218,223-242,252-274,287-309,314-336
Y59A8B.21 9 22-44,51-70,74-96,108-130,196-218,223-242,252-274,287-309,314-336
Sequence
Target Sequence 
>C. ELEGANS:184358_AT
ggatatttcctgcaaccggaactcctacaccgtgttccagcattattcacaaaattggca
gtgatctacggaattatgcaggcgatggcgctgattgtcgtttgtgatccgccgtttcgg
acgtacggagaatccttcatcgaagacgatatgttcatggcaatggccttctcaattgct
tcagttgcaaatgcaattgcacgaattggatggggttatttgacggatcgaacgagtttt
caaattgctctttcaactgccacgtgtcttgccagtgtatttctacttactatgccaatg
actagggaattgggaaaaatggctttcttgttttggctcgtcggaacatttatctgtatg
ggtgcaactcacgcgttattcatcactgcaactgtcaaatgtttcggaaatcggcataaa
gccaataattatggatatttgatcctttcaacgacaacgagtggaatcctattggcagcg
atctctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATATTTCCTGCAACCGGAACTCC 282 499 763 Antisense
TACACCGTGTTCCAGCATTATTCAC 255 643 788 Antisense
GATGGCGCTGATTGTCGTTTGTGAT 198 407 846 Antisense
GGACGTACGGAGAATCCTTCATCGA 49 525 881 Antisense
CAATGGCCTTCTCAATTGCTTCAGT 396 183 923 Antisense
GCCACGTGTCTTGCCAGTGTATTTC 29 279 1021 Antisense
GTGTATTTCTACTTACTATGCCAAT 637 485 1037 Antisense
AAAATGGCTTTCTTGTTTTGGCTCG 91 133 1078 Antisense
TTGGCTCGTCGGAACATTTATCTGT 403 705 1095 Antisense
AACTCACGCGTTATTCATCACTGCA 593 139 1128 Antisense
GGAATCCTATTGGCAGCGATCTCTC 619 531 1225 Antisense
Sequence Source Affymetrix Proprietary Database