[Home] | [Total List]

[184357_at]

Description F29B9.10 /REP_DB=WormBase Gene ID /WP=CE09788 /TR=Q9GYI2 /GB=AAF99924.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 45      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 74      6grp_total > 45      4grp_total > 48      6grp_highest_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 407
1 2 3 4 range
A 510.1
(-3)
P 		740.2
(3)
P 		732
(2.8)
P 		724.9
(2.6)
P 		230
B 587.7
(-3)
P 		728
(-0.4)
P 		917.3
(3)
P 		602.6
(-2.7)
P 		330
C 566.7
(-3)
P 		721.4
(0.3)
P 		844.5
(3)
P 		663.6
(-0.9)
P 		278
avr 554.8
(-3) 		729.9
(0.8) 		831.3
(3) 		663.7
(-0.6) 		277

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 242
1 2 3 4 5 6 range
A 604.1
(-0.4)
P 		684.9
(1.8)
P 		727.6
(3)
P 		604.9
(-0.4)
P 		509
(-3)
P 		530.2
(-2.4)
P 		219
B 689.1
(1.7)
P 		740.7
(3)
P 		702.5
(2.1)
P 		499
(-3)
P 		574.6
(-1.1)
P 		737
(2.9)
P 		242
C 687.2
(1.4)
P 		698
(1.7)
P 		614.7
(-0.8)
P 		543.9
(-3)
P 		629.9
(-0.4)
P 		740.1
(3)
P 		196
avr 660.1
(1.2) 		707.9
(3) 		681.6
(2) 		549.3
(-3) 		571.2
(-2.2) 		669.1
(1.5) 		159
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 185.7
(2.6)
P 		160.7
(0.8)
P 		191.4
(3)
P 		106.1
(-3)
P 		85
B 187.4
(1.2)
P 		179.8
(0.7)
P 		212.6
(3)
P 		128.4
(-3)
P 		84
C 187.6
(-0.5)
P 		207.4
(0.1)
P 		294.3
(3)
P 		111.9
(-3)
P 		182
avr 186.9
(0.7) 		182.6
(0.4) 		232.8
(3) 		115.5
(-3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 111.4
(-3)
P 		243.6
(3)
P 		158.5
(-0.9)
P 		153.4
(-1.1)
P 		153.6
(-1.1)
P 		129.1
(-2.2)
P 		132
B 239.8
(1.5)
P 		246.6
(1.8)
P 		170.6
(-1.4)
P 		132.2
(-3)
P 		233.4
(1.3)
P 		274.8
(3)
P 		143
C 254.7
(3)
P 		213
(1.3)
P 		156.4
(-1.1)
P 		109.4
(-3)
P 		203.8
(0.9)
P 		247.8
(2.7)
P 		145
avr 202
(1.1) 		234.4
(3) 		161.8
(-1.2) 		131.7
(-3) 		196.9
(0.8) 		217.2
(2) 		103
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184357_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10717
Sequence Type Exemplar sequence
Representative Public ID F29B9.10 NCBI
Target Description F29B9.10 /REP_DB=WormBase Gene ID /WP=CE09788 /TR=Q9GYI2 /GB=AAF99924.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068207(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068207 NCBI Caenorhabditis elegans F29B9.10 (F29B9.10) mRNA, complete cds. 11/11 None
SNAP00000034767 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4659114:4659508:-1 11/11 None
F29B9.10 ENSEMBL cdna:known chromosome:CEL140:IV:4659114:4659403:-1 gene:F29B9.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4659119-4659409(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F29B9.10
Entrez Gene 185109 Entrez gene
SwissProt Q9GYI2 EMBL-EBI
WormBase CE09788 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500608 F29B9.10 [Caenorhabditis elegans] gb|AAF99924.1| Hypothetical protein F29B9.10 [Caenorhabditis elegans] 2.0E-38
blast CAE58562 Hypothetical protein CBG01725 [Caenorhabditis briggsae] 7.0E-38
blast CAE58562 Hypothetical protein CBG01725 [Caenorhabditis briggsae] 8.0E-38
blast AAN13563 CG32854-PA [Drosophila melanogaster] ref|NP_731803.1| CG32854-PA [Drosophila melanogaster] gb|AAN71332.1| RE23482p [Drosophila melanogaster] 1.0E-18
blast AAN13563 CG32854-PA [Drosophila melanogaster] ref|NP_731803.1| CG32854-PA [Drosophila melanogaster] gb|AAN71332.1| RE23482p [Drosophila melanogaster] 1.0E-15
Sequence
Target Sequence 
>C. ELEGANS:184357_AT
atggtgcagaacaatgatgtcgatggagctttcggacttcttaacagattgatggattca
gaaggaatgctgaaaatcattcgccgcactcaattctatcagaagccctacatgcaacga
aaaacactgtcgatggaagcatcaacggcgattttcaacgaggacatgaaccgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGTGCAGAACAATGATGTCGATG 93 51 13 Antisense
GATGTCGATGGAGCTTTCGGACTTC 148 409 28 Antisense
GATGGAGCTTTCGGACTTCTTAACA 584 405 34 Antisense
GAGCTTTCGGACTTCTTAACAGATT 135 385 38 Antisense
CTTCTTAACAGATTGATGGATTCAG 81 219 49 Antisense
TTCGCCGCACTCAATTCTATCAGAA 365 697 92 Antisense
AATTCTATCAGAAGCCCTACATGCA 239 177 104 Antisense
TATCAGAAGCCCTACATGCAACGAA 168 659 109 Antisense
GAAAAACACTGTCGATGGAAGCATC 557 355 131 Antisense
GGAAGCATCAACGGCGATTTTCAAC 301 531 147 Antisense
GATTTTCAACGAGGACATGAACCGG 455 427 162 Antisense
Sequence Source Affymetrix Proprietary Database