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[184355_at]

Description Y73F8A.10 /REP_DB=WormBase Gene ID /WP=CE22979 /TR=Q9NA60 /GB=CAB60535.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 28      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 52.5
(0.2)
A 		24.9
(-2.2)
A 		15.1
(-3)
A 		85
(3)
A 		70
B 29.2
(-3)
A 		76.8
(3)
A 		37.7
(-1.9)
A 		66.2
(1.7)
A 		48
C 20.3
(2)
A 		23.6
(3)
A 		4.3
(-3)
A 		15.9
(0.6)
A 		19
avr 34
(-0.5) 		41.8
(0.7) 		19
(-3) 		55.7
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 23.7
(-2.4)
A 		30.7
(-1.6)
A 		73.3
(3)
A 		18.1
(-3)
A 		36.7
(-1)
A 		20.2
(-2.8)
A 		55
B 17.6
(-1.6)
A 		50.2
(2.7)
A 		6.6
(-3)
A 		52.7
(3)
A 		37.7
(1)
A 		17.4
(-1.6)
A 		46
C 22.2
(-2.5)
A 		84.7
(3)
A 		24.5
(-2.3)
A 		62.2
(1)
A 		15.9
(-3)
A 		33.5
(-1.5)
A 		69
avr 21.2
(-3) 		55.2
(3) 		34.8
(-0.6) 		44.3
(1.1) 		30.1
(-1.4) 		23.7
(-2.6) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 19.1
(3)
A 		5.4
(-2.4)
A 		3.9
(-3)
A 		12.4
(0.4)
A 		15
B 9.3
(-2.7)
A 		19
(3)
A 		8.7
(-3)
A 		14.1
(0.1)
A 		10
C 6.7
(2.9)
A 		6.8
(3)
A 		1.5
(-3)
A 		2.7
(-1.6)
A 		5
avr 11.7
(3) 		10.4
(1.9) 		4.7
(-3) 		9.7
(1.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 4.4
(-3)
A 		10.9
(0.4)
A 		16
(3)
A 		4.6
(-2.9)
A 		11.1
(0.5)
A 		4.9
(-2.7)
A 		12
B 6.1
(-1.2)
A 		16.7
(3)
A 		1.6
(-3)
A 		14
(1.9)
A 		15.3
(2.4)
A 		6.5
(-1.1)
A 		15
C 8.2
(-2.1)
A 		25.8
(3)
A 		6.2
(-2.7)
A 		12.5
(-0.9)
A 		5.1
(-3)
A 		11.2
(-1.2)
A 		21
avr 6.2
(-3) 		17.8
(3) 		7.9
(-2.1) 		10.4
(-0.8) 		10.5
(-0.8) 		7.5
(-2.3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184355_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9156
Sequence Type Exemplar sequence
Representative Public ID Y73F8A.10 NCBI
Target Description Y73F8A.10 /REP_DB=WormBase Gene ID /WP=CE22979 /TR=Q9NA60 /GB=CAB60535.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070444(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070444 NCBI Caenorhabditis elegans Y73F8A.10 (Y73F8A.10) mRNA, complete cds. 10/11 None
SNAP00000030811 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15294302:15295259:1 10/11 None
GENEFINDER00000030893 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15294302:15295259:1 11/11 None
Y73F8A.10 ENSEMBL cdna:known chromosome:CEL140:IV:15294302:15295259:1 gene:Y73F8A.10 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15294307-15295265(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73F8A.10
Entrez Gene 190673 Entrez gene
SwissProt Q9NA60 EMBL-EBI
WormBase CE36250 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60535 Hypothetical protein Y73F8A.10 [Caenorhabditis elegans] ref|NP_502845.2| Y73F8A.10 [Caenorhabditis elegans] 2.0E-99
blast CAB60535 Hypothetical protein Y73F8A.10 [Caenorhabditis elegans] ref|NP_502845.2| Y73F8A.10 [Caenorhabditis elegans] 3.0E-97
Sequence
Target Sequence 
>C. ELEGANS:184355_AT
tatttttgatcttcctggcggcttatgggtttccagatagtttagcatgtgttctgcccg
agaaaacgtctccatccactgtttcaaatactattgaaaccggggaaattgtgaaaagtt
ctacaactgctagctattcgacaacacttatttctactacgaccactaaaatttctaaaa
ttataacagaaatatcccgaacaaagtgcgactgttcatcaccgaattcatttaatacag
gtattttagaacttaacgtctgttttctcaacaaacttcaagtctcagaagtatcagacg
acggatgtttgtacgaaattctttgcgcccaaaatcagccaaatagttatttggcggccg
gtccgccatcagtttttacactgaatccatacctactgaccagttttagattctatccgg
ttttcaacggggccaacaaaatcgattatttctcccaatttggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTTTTGATCTTCCTGGCGGCTTA 336 661 26 Antisense
GTTTAGCATGTGTTCTGCCCGAGAA 364 449 65 Antisense
TCTCCATCCACTGTTTCAAATACTA 117 611 94 Antisense
GTTCTACAACTGCTAGCTATTCGAC 474 441 143 Antisense
AACACTTATTTCTACTACGACCACT 690 135 168 Antisense
AAGTGCGACTGTTCATCACCGAATT 384 157 229 Antisense
GAACTTAACGTCTGTTTTCTCAACA 45 351 274 Antisense
TGTACGAAATTCTTTGCGCCCAAAA 32 559 335 Antisense
GGTCCGCCATCAGTTTTTACACTGA 74 501 385 Antisense
TACACTGAATCCATACCTACTGACC 172 641 402 Antisense
AATCGATTATTTCTCCCAATTTGGT 17 159 465 Antisense
Sequence Source Affymetrix Proprietary Database