[Home] | [Total List]

[184353_at]

Description Y51H4A.22 /REP_DB=WormBase Gene ID /WP=CE22347 /TR=Q9NAD2 /GB=CAB61154.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 25      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 25.2
(-2.4)
A 		17.6
(-3)
A 		28.4
(-2.1)
A 		89.3
(3)
A 		72
B 12.2
(-2.4)
A 		70.4
(2.9)
A 		72
(3)
A 		5.2
(-3)
A 		67
C 7.5
(-3)
A 		51
(0.2)
A 		39.3
(-0.7)
A 		89.6
(3)
A 		82
avr 15
(-3) 		46.3
(1) 		46.6
(1.1) 		61.4
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 70.7
(-0.1)
A 		19.8
(-2.8)
A 		16.5
(-3)
A 		21.1
(-2.8)
A 		77.5
(0.3)
A 		129.1
(3)
A 		113
B 68.5
(-0.6)
A 		20.3
(-3)
A 		40.7
(-2)
A 		28.1
(-2.6)
A 		64.5
(-0.8)
A 		139.7
(3)
A 		119
C 51.5
(-1.2)
A 		10.9
(-3)
A 		13.7
(-2.9)
A 		34.9
(-1.9)
A 		106.2
(1.3)
A 		144.1
(3)
A 		133
avr 63.6
(-0.7) 		17
(-3) 		23.6
(-2.7) 		28
(-2.5) 		82.7
(0.3) 		137.6
(3) 		121
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 9.2
(0.5)
A 		3.8
(-3)
A 		7.4
(-0.7)
A 		13.1
(3)
A 		9
B 3.9
(-2)
A 		17.4
(3)
A 		16.7
(2.7)
A 		1.1
(-3)
A 		16
C 2.5
(-3)
A 		14.7
(2.8)
A 		13.7
(2.3)
A 		15.1
(3)
A 		13
avr 5.2
(-3) 		12
(2.5) 		12.6
(3) 		9.8
(0.7) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 13
(-1)
A 		7
(-2.3)
A 		3.6
(-3)
A 		5.4
(-2.6)
A 		23.4
(1.3)
A 		31.4
(3)
A 		28
B 23.8
(-0.7)
A 		6.7
(-3)
A 		9.9
(-2.6)
A 		7.4
(-2.9)
A 		26.2
(-0.4)
A 		52.1
(3)
A 		45
C 19.1
(-0.9)
A 		3.3
(-3)
A 		3.5
(-3)
A 		7
(-2.5)
A 		34.4
(1.2)
A 		48.2
(3)
A 		45
avr 18.6
(-1) 		5.7
(-3) 		5.7
(-3) 		6.6
(-2.9) 		28
(0.5) 		43.9
(3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184353_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9817
Sequence Type Exemplar sequence
Representative Public ID Y51H4A.22 NCBI
Target Description Y51H4A.22 /REP_DB=WormBase Gene ID /WP=CE22347 /TR=Q9NAD2 /GB=CAB61154.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070578(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070578 NCBI Caenorhabditis elegans Y51H4A.22 (Y51H4A.22) mRNA, complete cds. 9/11 None
GENEFINDER00000000221 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16720674:16722700:1 11/11 None
Y51H4A.22 ENSEMBL cdna:known chromosome:CEL140:IV:16720674:16722695:1 gene:Y51H4A.22 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000196 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16720679-16722706(+) 86.06 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51H4A.22
Entrez Gene 190157 Entrez gene
SwissProt Q9NAD2 EMBL-EBI
WormBase CE35669 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB61154 Hypothetical protein Y51H4A.22 [Caenorhabditis elegans] ref|NP_502979.2| Y51H4A.22 [Caenorhabditis elegans] 1.0E-164
blast CAB61154 Hypothetical protein Y51H4A.22 [Caenorhabditis elegans] ref|NP_502979.2| Y51H4A.22 [Caenorhabditis elegans] 1.0E-159
blast NP_001023366 T08B6.9 [Caenorhabditis elegans] gb|AAO91700.1| Hypothetical protein T08B6.9 [Caenorhabditis elegans] 2.0E-65
blast NP_001023366 T08B6.9 [Caenorhabditis elegans] gb|AAO91700.1| Hypothetical protein T08B6.9 [Caenorhabditis elegans] 6.0E-65
blast CAB07565 Hypothetical protein C38C6.5 [Caenorhabditis elegans] ref|NP_497040.2| C38C6.5 [Caenorhabditis elegans] 5.0E-35
blast CAB07565 Hypothetical protein C38C6.5 [Caenorhabditis elegans] ref|NP_497040.2| C38C6.5 [Caenorhabditis elegans] 2.0E-33
Sequence
Target Sequence 
>C. ELEGANS:184353_AT
gcacctaagacccaacttcttgatcacggaactccatcaaggcggaagttgtgcagatca
tggagttgttggatacgcgatgcttgatccagcaacggaacctctaaaagctgcttccag
tgccaagggattgttctatctattcactccgagctatttcaagtacattggtgttccgtt
gaataagctttcaacaaattggctctgggcactggatcccaaggatcttaaagtggaaat
ttgtcaccaaaatgaagaggctccagtagaatatactagaggccccacctttttctcgtc
cactcaaaaaaaaactctgtaccccaaccaatatcaggccgctgacatctcacgggttcc
gcgcgccgctgcgtttaactcgctgtgggcgtggcgcccgctgcgagttaaacatagcgg
cgcgcggaacccaacaactttattcgtccacgtggtgacctttccacgtctacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACCTAAGACCCAACTTCTTGATC 130 315 558 Antisense
GATCACGGAACTCCATCAAGGCGGA 445 419 579 Antisense
GGAGTTGTTGGATACGCGATGCTTG 122 519 619 Antisense
GCTTGATCCAGCAACGGAACCTCTA 255 307 639 Antisense
AAGCTGCTTCCAGTGCCAAGGGATT 345 149 665 Antisense
GGGATTGTTCTATCTATTCACTCCG 375 495 684 Antisense
TTCACTCCGAGCTATTTCAAGTACA 104 687 700 Antisense
CAAATTGGCTCTGGGCACTGGATCC 620 193 752 Antisense
GAATATACTAGAGGCCCCACCTTTT 255 325 826 Antisense
CAACAACTTTATTCGTCCACGTGGT 493 187 989 Antisense
CGTGGTGACCTTTCCACGTCTACAC 78 243 1008 Antisense
Sequence Source Affymetrix Proprietary Database