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[184352_at]

Description C17H12.6 /REP_DB=WormBase Gene ID /WP=CE16867 /TR=O45077 /GB=AAC02585.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 41      4grp_total > 14      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 61.6
(-0.8)
P 		38.8
(-2.3)
A 		27.8
(-3)
A 		118.2
(3)
M 		90
B 62.4
(2.5)
P 		64.6
(3)
M 		46.9
(-1)
A 		38.3
(-3)
P 		26
C 71
(1.6)
P 		51
(-2.5)
A 		77.8
(3)
P 		48.3
(-3)
A 		30
avr 65
(1.9) 		51.5
(-2.8) 		50.8
(-3) 		68.3
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 82.9
(1.4)
M 		51.5
(-1.7)
P 		99.7
(3)
P 		90.9
(2.1)
P 		61.1
(-0.8)
P 		38.1
(-3)
A 		62
B 94.5
(3)
P 		50.1
(-0.1)
P 		90.1
(2.7)
P 		81.9
(2.1)
P 		38.7
(-0.9)
A 		8.9
(-3)
A 		86
C 54.9
(-0.9)
P 		62
(-0.3)
P 		99.2
(3)
P 		82
(1.5)
P 		69.9
(0.4)
P 		31
(-3)
A 		68
avr 77.4
(1.4) 		54.5
(-0.6) 		96.3
(3) 		84.9
(2) 		56.6
(-0.4) 		26
(-3) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 22.4
(3)
P 		8.4
(-2.6)
A 		7.3
(-3)
A 		17.3
(1)
M 		15
B 19.9
(3)
P 		16
(1)
M 		10.9
(-1.6)
A 		8.2
(-3)
P 		12
C 23.5
(1.9)
P 		14.7
(-0.9)
A 		27.1
(3)
P 		8.1
(-3)
A 		19
avr 21.9
(3) 		13
(-2) 		15.1
(-0.8) 		11.2
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 15.3
(-0.4)
M 		18.3
(0.9)
P 		21.7
(2.4)
P 		23.1
(3)
P 		18.5
(1)
P 		9.3
(-3)
A 		14
B 32.9
(3)
P 		16.7
(-0.3)
P 		21.9
(0.8)
P 		21.7
(0.7)
P 		15.7
(-0.5)
A 		3.3
(-3)
A 		30
C 20.3
(1)
P 		18.9
(0.4)
P 		25.2
(3)
P 		16.5
(-0.5)
P 		22.6
(1.9)
P 		10.4
(-3)
A 		15
avr 22.8
(3) 		18
(1.1) 		22.9
(3) 		20.4
(2) 		18.9
(1.4) 		7.7
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184352_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9148
Sequence Type Exemplar sequence
Representative Public ID C17H12.6 NCBI
Target Description C17H12.6 /REP_DB=WormBase Gene ID /WP=CE16867 /TR=O45077 /GB=AAC02585.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068648(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068648 NCBI Caenorhabditis elegans C17H12.6 (C17H12.6) mRNA, complete cds. 11/11 None
SNAP00000015115 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6820435:6822472:-1 11/11 None
GENEFINDER00000015123 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6821297:6822472:-1 10/11 None
C17H12.6 ENSEMBL cdna:known chromosome:CEL140:IV:6821326:6822472:-1 gene:C17H12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6821331-6822478(-) 99.89 100.0
Public Domain and Genome References
Gene Title
Ensembl C17H12.6
Entrez Gene 182755 Entrez gene
SwissProt O45077 EMBL-EBI
WormBase CE16867 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC02585 Hypothetical protein C17H12.6 [Caenorhabditis elegans] ref|NP_501049.1| C17H12.6 [Caenorhabditis elegans] 1.0E-164
blast AAC02585 Hypothetical protein C17H12.6 [Caenorhabditis elegans] ref|NP_501049.1| C17H12.6 [Caenorhabditis elegans] 1.0E-163
blast AAC02585 Hypothetical protein C17H12.6 [Caenorhabditis elegans] ref|NP_501049.1| C17H12.6 [Caenorhabditis elegans] 1.0E-161
blast AAD34648 Hypothetical protein C17H12.8 [Caenorhabditis elegans] ref|NP_501048.1| C17H12.8 [Caenorhabditis elegans] 1.0E-106
blast G88711 protein C17H12.8 [imported] - Caenorhabditis elegans 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 5.3E-36
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 4.3E-30
Sequence
Target Sequence 
>C. ELEGANS:184352_AT
gatcaacagggaacatacactcgtgtttcaagtcgttctccatcagttcttaatttctac
gtcttcccaaatacaacgacgacattccaagttgtcactaaaagtgtggacatgcattca
tcattcagaatgattgttttctaccaacccatgtacactgaaactgtcactcatcttgga
aatccggatatgaaatattttatgctgaatgacttgcaggagaactcttacaaaacacca
caaacaataatttcaaatgaaaaaatatccgtttcaatggctagttctgggtgggatgca
gatatttttgagaattatttcattattaaaggggacttaaacaacacgaaatctgtatcc
cgtttatcaagatttgtaggtcagggatacatcagcaccggaagcagtttgact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCAACAGGGAACATACACTCGTG 428 421 265 Antisense
TACACTCGTGTTTCAAGTCGTTCTC 218 643 280 Antisense
TCGTTCTCCATCAGTTCTTAATTTC 240 603 297 Antisense
TAATTTCTACGTCTTCCCAAATACA 305 635 315 Antisense
GAATGATTGTTTTCTACCAACCCAT 15 331 392 Antisense
ACCAACCCATGTACACTGAAACTGT 634 83 407 Antisense
AACTGTCACTCATCTTGGAAATCCG 182 141 426 Antisense
GAATGACTTGCAGGAGAACTCTTAC 216 331 471 Antisense
CCGTTTCAATGGCTAGTTCTGGGTG 360 263 533 Antisense
ACACGAAATCTGTATCCCGTTTATC 465 99 608 Antisense
CATCAGCACCGGAAGCAGTTTGACT 518 211 654 Antisense
Sequence Source Affymetrix Proprietary Database