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[184351_at]

Description Y73F8A.18 /REP_DB=WormBase Gene ID /WP=CE22987 /TR=Q9NA54 /GB=CAB60543.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 60      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 43
(-3)
A 		79.4
(3)
A 		52.9
(-1.4)
A 		68.4
(1.2)
A 		36
B 52.9
(3)
A 		29.2
(-0.2)
A 		36.1
(0.7)
A 		8.8
(-3)
A 		44
C 49.6
(0.7)
A 		29.1
(-2.3)
A 		65.6
(3)
A 		24.3
(-3)
A 		41
avr 48.5
(2) 		45.9
(1.1) 		51.5
(3) 		33.8
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 14.9
(-2.1)
A 		7.4
(-3)
A 		53.1
(2.3)
A 		27.3
(-0.7)
A 		59.1
(3)
A 		7.3
(-3)
A 		52
B 39.6
(-0.6)
A 		63.5
(2)
A 		40.3
(-0.6)
A 		72.5
(3)
A 		18.4
(-3)
A 		46.9
(0.2)
A 		54
C 57.1
(3)
A 		49.8
(2)
A 		13.3
(-2.9)
A 		12.8
(-3)
A 		30.6
(-0.6)
A 		33.8
(-0.2)
A 		44
avr 37.2
(1.3) 		40.2
(3) 		35.6
(0.5) 		37.5
(1.5) 		36
(0.7) 		29.3
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 15.6
(1.7)
A 		17.2
(3)
A 		13.8
(0.2)
A 		10
(-3)
A 		7
B 16.9
(3)
A 		7.2
(-0.9)
A 		8.4
(-0.4)
A 		1.9
(-3)
A 		15
C 16.4
(0.9)
A 		8.4
(-1.6)
A 		22.9
(3)
A 		4.1
(-3)
A 		19
avr 16.3
(3) 		10.9
(0.1) 		15
(2.3) 		5.3
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 2.8
(-2.6)
A 		2.6
(-2.7)
A 		11.6
(0.7)
A 		6.9
(-1.1)
A 		17.8
(3)
A 		1.8
(-3)
A 		16
B 13.8
(-0.2)
A 		21.2
(3)
A 		9.8
(-2)
A 		19.2
(2.1)
A 		7.5
(-3)
A 		17.5
(1.4)
A 		14
C 21.2
(3)
A 		15.2
(1.1)
A 		3.4
(-2.7)
A 		2.6
(-3)
A 		9.9
(-0.6)
A 		11.3
(-0.2)
A 		19
avr 12.6
(2.5) 		13
(3) 		8.3
(-3) 		9.6
(-1.3) 		11.7
(1.3) 		10.2
(-0.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184351_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9089
Sequence Type Exemplar sequence
Representative Public ID Y73F8A.18 NCBI
Target Description Y73F8A.18 /REP_DB=WormBase Gene ID /WP=CE22987 /TR=Q9NA54 /GB=CAB60543.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070452(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070452 NCBI Caenorhabditis elegans Y73F8A.18 (Y73F8A.18) mRNA, complete cds. 11/11 None
GENEFINDER00000030906 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15337040:15339731:1 11/11 None
Y73F8A.18 ENSEMBL cdna:known chromosome:CEL140:IV:15337040:15339731:1 gene:Y73F8A.18 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15337045-15339737(+) 97.41 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73F8A.18
Entrez Gene 190680 Entrez gene
SwissProt Q9NA54 EMBL-EBI
WormBase CE22987 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60543 Hypothetical protein Y73F8A.18 [Caenorhabditis elegans] ref|NP_502853.1| Y73F8A.18 [Caenorhabditis elegans] 0.0
blast AAC24278 Hypothetical protein C17E7.10 [Caenorhabditis elegans] ref|NP_504077.2| C17E7.10 [Caenorhabditis elegans] 7.0E-99
blast CAB07359 Hypothetical protein F11A5.7 [Caenorhabditis elegans] ref|NP_507087.2| F11A5.7 [Caenorhabditis elegans] 2.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.4E-12
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 7.6E-15
Sequence
Target Sequence 
>C. ELEGANS:184351_AT
gtgagccggctgtaactgagaatttgtgcaaatctcctgaaatatgctcacgagttttgg
gtgatgtcgaagttggttcaaattctagtctggaaaatatgaagtctattgaattgatat
ttggcagccttattatcagtggaacccagctgaccaacgtcagctttctggaaaatttga
aatacgtggcacagttggctgaagcaaagtcagcgataattgtggaaaataatccgaatc
ttctcaatatctccttcccaaaattaaaacgagtgcgatccgacatcaatagtgtttcag
tagtttttactgataacaatgaaaatctgaaattggacgttagtaactgttataagttga
gaaatgatttgggaatgactacagacttgtcgccgacatttgatggagaaagttgtgaca
ataaaagctcaaaattaaatagaaaattttttttaaaattcagattcaatgaattcaagt
gctccagctgctccttgcattgtggtagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAGCCGGCTGTAACTGAGAATTT 209 483 626 Antisense
ATCTCCTGAAATATGCTCACGAGTT 583 31 657 Antisense
GGCAGCCTTATTATCAGTGGAACCC 566 533 748 Antisense
TCAGTGGAACCCAGCTGACCAACGT 446 617 761 Antisense
TGACCAACGTCAGCTTTCTGGAAAA 226 569 776 Antisense
AATCCGAATCTTCTCAATATCTCCT 686 167 856 Antisense
TCTCAATATCTCCTTCCCAAAATTA 391 613 867 Antisense
AAACGAGTGCGATCCGACATCAATA 54 127 892 Antisense
ATGACTACAGACTTGTCGCCGACAT 213 45 1000 Antisense
ATGAATTCAAGTGCTCCAGCTGCTC 611 43 1094 Antisense
AGCTGCTCCTTGCATTGTGGTAGGA 475 79 1111 Antisense
Sequence Source Affymetrix Proprietary Database