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[184350_s_at]

Description Y51H4A.18 /REP_DB=WormBase Gene ID /WP=CE22343 /TR=Q9NAD5 /GB=CAB61150.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 22      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 323
1 2 3 4 range
A 353.4
(3)
P 		216.9
(-0.3)
A 		106.7
(-3)
A 		324.1
(2.3)
P 		247
B 293.9
(1.9)
P 		203.3
(-1.5)
P 		163.1
(-3)
A 		324.1
(3)
P 		161
C 360.5
(1.6)
P 		151.9
(-2.6)
A 		130.5
(-3)
A 		429.6
(3)
P 		299
avr 335.9
(2.4) 		190.7
(-1.5) 		133.4
(-3) 		359.3
(3) 		226

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 188.2
(-0.7)
P 		315.8
(3)
P 		116.8
(-2.8)
P 		233.2
(0.6)
P 		108.6
(-3)
A 		124.2
(-2.5)
P 		207
B 187.9
(3)
P 		154.7
(0.7)
A 		127.7
(-1.2)
M 		164.1
(1.4)
A 		133.4
(-0.8)
A 		101.2
(-3)
P 		87
C 225.3
(3)
P 		211.1
(2.3)
M 		106.7
(-3)
P 		141.8
(-1.2)
A 		138.8
(-1.4)
M 		156.9
(-0.5)
P 		119
avr 200.5
(1.5) 		227.2
(3) 		117.1
(-3) 		179.7
(0.4) 		126.9
(-2.5) 		127.4
(-2.4) 		110
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 128.7
(3)
P 		47.1
(-1.9)
A 		27.9
(-3)
A 		47.4
(-1.8)
P 		101
B 93.7
(3)
P 		50.2
(-1.7)
P 		37.8
(-3)
A 		69.1
(0.4)
P 		56
C 119.3
(3)
P 		43.7
(-3)
A 		45.5
(-2.9)
A 		72.4
(-0.7)
P 		76
avr 113.9
(3) 		47
(-2.2) 		37.1
(-3) 		63
(-1) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 34.7
(-2.4)
P 		112.3
(3)
P 		25.4
(-3)
P 		59.1
(-0.7)
P 		32.8
(-2.5)
A 		30.3
(-2.7)
P 		87
B 65.4
(3)
P 		51.5
(0.6)
A 		31
(-3)
M 		43.5
(-0.8)
A 		54.2
(1)
A 		37.7
(-1.8)
P 		34
C 83.5
(3)
P 		64.4
(1)
M 		27.1
(-3)
P 		28.5
(-2.9)
A 		44.9
(-1.1)
M 		52.5
(-0.3)
P 		56
avr 61.2
(1.1) 		76.1
(3) 		27.8
(-3) 		43.7
(-1) 		44
(-1) 		40.2
(-1.5) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184350_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9050
Sequence Type Exemplar sequence
Representative Public ID Y51H4A.18 NCBI
Target Description Y51H4A.18 /REP_DB=WormBase Gene ID /WP=CE22343 /TR=Q9NAD5 /GB=CAB61150.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070574(11), NM_070573(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070574 NCBI Caenorhabditis elegans Y51H4A.18 (Y51H4A.18) mRNA, complete cds. 11/11 None
NM_070573 NCBI Caenorhabditis elegans Y51H4A.17 (Y51H4A.17) mRNA, complete cds. 11/11 A 
SNAP00000000190 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16664281:16667511:1 11/11 None
SNAP00000000192 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16672616:16678773:1 11/11 None
GENEFINDER00000000207 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16672616:16672999:1 11/11 None
GENEFINDER00000000211 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16664281:16671218:1 11/11 None
Y51H4A.17 ENSEMBL cdna:known chromosome:CEL140:IV:16664279:16671415:1 gene:Y51H4A.17 11/11 A 
Y51H4A.18 ENSEMBL cdna:known chromosome:CEL140:IV:16672616:16672999:1 gene:Y51H4A.18 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16672621-16673005(+) 100.0 100.0
chrIV:16664286-16664672(+) 94.27 94.27
Public Domain and Genome References
Gene Title

Ensembl Y51H4A.17
Y51H4A.18
Entrez Gene 178465 Entrez gene
190153 Entrez gene
SwissProt Q9NAD6 EMBL-EBI
Q9NAD5 EMBL-EBI
WormBase CE35668 Wormbase
CE22343 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.19520.1.S1_AT similar to Signal transducer and activator of transcription 5A cfa
CANINE_2:CFAAFFX.23632.1.S1_AT similar to Signal transducer and activator of transcription 5A cfa
CANINE_2:CFAAFFX.23632.1.S1_S_AT similar to Signal transducer and activator of transcription 5A cfa
DROSOPHILA_2:1635827_S_AT Signal-transducer and activator of transcription protein at 92E dm
DROSGENOME1:142948_AT Signal-transducer and activator of transcription protein at 92E dm
HG-U133A:203010_AT signal transducer and activator of transcription 5A hs
HG-U133_PLUS_2:203010_AT signal transducer and activator of transcription 5A hs
HG-U133A_2:203010_AT signal transducer and activator of transcription 5A hs
HG-FOCUS:203010_AT signal transducer and activator of transcription 5A hs
HG-U95AV2:506_S_AT signal transducer and activator of transcription 5A hs
HC-G110:506_S_AT signal transducer and activator of transcription 5A hs
HUGENEFL:U43185_S_AT signal transducer and activator of transcription 5A hs
HG-U95AV2:40458_AT signal transducer and activator of transcription 5A hs
HG-U95D:75183_AT signal transducer and activator of transcription 5A hs
MOUSE430A_2:1421469_A_AT signal transducer and activator of transcription 5A mm
MOE430A:1421469_A_AT signal transducer and activator of transcription 5A mm
MOUSE430_2:1421469_A_AT signal transducer and activator of transcription 5A mm
MU11KSUBA:U21103_S_AT signal transducer and activator of transcription 5A mm
MG-U74AV2:100422_I_AT signal transducer and activator of transcription 5A mm
MG-U74AV2:100423_F_AT signal transducer and activator of transcription 5A mm
MOE430A:1450259_A_AT signal transducer and activator of transcription 5A mm
MOUSE430A_2:1450259_A_AT signal transducer and activator of transcription 5A mm
MOUSE430_2:1450259_A_AT signal transducer and activator of transcription 5A mm
MG-U74CV2:140432_R_AT Signal transducer and activator of transcription 5B (Stat5b) mm
MOE430B:1420178_AT Signal transducer and activator of transcription 5B (Stat5b) mm
MOUSE430_2:1420178_AT Signal transducer and activator of transcription 5B (Stat5b) mm
RG-U34A:U24175_AT signal transducer and activator of transcription 5A rn
RG-U34A:U25137_AT signal transducer and activator of transcription 5A rn
RAE230A:1368231_AT signal transducer and activator of transcription 5A rn
RAT230_2:1368231_AT signal transducer and activator of transcription 5A rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
4871 signal transducer activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB61149 Hypothetical protein Y51H4A.17 [Caenorhabditis elegans] ref|NP_502974.2| Y51H4A.17 [Caenorhabditis elegans] 0.0
blast CAE68055 Hypothetical protein CBG13675 [Caenorhabditis briggsae] 0.0
blast CAB61150 Hypothetical protein Y51H4A.18 [Caenorhabditis elegans] ref|NP_502975.1| Y51H4A.18 [Caenorhabditis elegans] 1.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR001217 EMBL-EBI STAT protein 2.0E-27
Pfam IPR001217 EMBL-EBI STAT protein 1.1E-13
Pfam IPR001217 EMBL-EBI STAT protein 1.8E-12
Sequence
Target Sequence 
>C. ELEGANS:184350_S_AT
gatgggctcatcgtcgcaagagcttcaaacagctctaaccgacgtctcaaagacctgcca
tcacttgtgggaagagaataaggacctccaaggcagatttgtgaatgaactcggcgagct
tcaacgtctgcaaatagtcattgcacagctggaacagcaacagagactagaaaatgtatt
cactgtgaaacagcaaatgacagagttacagaaaagagcagccacactttatgagcattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGGCTCATCGTCGCAAGAGCTT 677 407 15 Antisense
CATCGTCGCAAGAGCTTCAAACAGC 397 211 23 Antisense
CAGCTCTAACCGACGTCTCAAAGAC 574 203 44 Antisense
TCTCAAAGACCTGCCATCACTTGTG 589 613 59 Antisense
AGACCTGCCATCACTTGTGGGAAGA 241 65 65 Antisense
TAAGGACCTCCAAGGCAGATTTGTG 160 637 93 Antisense
GGCAGATTTGTGAATGAACTCGGCG 125 533 106 Antisense
ATGAACTCGGCGAGCTTCAACGTCT 234 45 119 Antisense
GTCATTGCACAGCTGGAACAGCAAC 465 465 151 Antisense
GAGTTACAGAAAAGAGCAGCCACAC 148 399 217 Antisense
GAGCAGCCACACTTTATGAGCATTT 336 389 230 Antisense
Sequence Source Affymetrix Proprietary Database