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[184349_at]

Description F15G10.1 /REP_DB=WormBase Gene ID /WP=CE09421 /TR=P91259 /GB=AAB42352.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      4grp_high_8_8 > 14      6grp_highest_nonorm > 90      6grp_total > 83      4grp_total > 09      6grp_highest_sub > 05      6grp_high1_sub > 05      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 71.8
(-3)
M 		114
(-1.7)
P 		85.5
(-2.6)
A 		271.4
(3)
P 		200
B 86.6
(-2.3)
P 		69.2
(-3)
P 		99.7
(-1.7)
P 		214
(3)
P 		145
C 70
(-3)
A 		149.9
(0.7)
P 		139.4
(0.2)
P 		199.4
(3)
P 		129
avr 76.1
(-3) 		111
(-1.6) 		108.2
(-1.7) 		228.3
(3) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 83.1
(-3)
P 		169.3
(2.5)
P 		128
(-0.1)
P 		177.2
(3)
P 		148.2
(1.2)
P 		160.7
(1.9)
P 		94
B 90.3
(-3)
P 		114.6
(-1.2)
P 		148.8
(1.4)
P 		126.7
(-0.2)
P 		169.4
(3)
P 		128.4
(-0.1)
P 		79
C 144
(-2.4)
P 		132.3
(-3)
P 		169.1
(-1)
P 		144.2
(-2.4)
P 		242.5
(3)
P 		166.9
(-1.1)
P 		110
avr 105.8
(-3) 		138.7
(-0.6) 		148.6
(0.2) 		149.4
(0.2) 		186.7
(3) 		152
(0.4) 		81
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 26.2
(-1.7)
M 		24.8
(-2.2)
P 		22.4
(-3)
A 		39.7
(3)
P 		17
B 27.6
(-0.8)
P 		17.1
(-3)
P 		23.1
(-1.7)
P 		45.6
(3)
P 		29
C 23.2
(-3)
A 		43.1
(1.7)
P 		48.6
(3)
P 		33.6
(-0.5)
P 		25
avr 25.7
(-3) 		28.3
(-1.9) 		31.4
(-0.5) 		39.6
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 15.3
(-3)
P 		60.2
(3)
P 		27.9
(-1.3)
P 		44.9
(1)
P 		44.7
(0.9)
P 		39.1
(0.2)
P 		45
B 31.4
(-3)
P 		38.1
(-1.9)
P 		36.1
(-2.2)
P 		33.6
(-2.6)
P 		68.8
(3)
P 		47.9
(-0.4)
P 		37
C 53.4
(-0)
P 		40.4
(-1.6)
P 		43
(-1.3)
P 		29
(-3)
P 		78.5
(3)
P 		55.9
(0.3)
P 		50
avr 33.4
(-3) 		46.2
(-0.5) 		35.7
(-2.5) 		35.8
(-2.5) 		64
(3) 		47.6
(-0.2) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184349_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17438
Sequence Type Exemplar sequence
Representative Public ID F15G10.1 NCBI
Target Description F15G10.1 /REP_DB=WormBase Gene ID /WP=CE09421 /TR=P91259 /GB=AAB42352.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171822(9), NM_001029567(9), NM_171981(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171822 NCBI Caenorhabditis elegans H18N23.2b (H18N23.2) mRNA, complete cds. 9/11 None
NM_001029567 NCBI Caenorhabditis elegans H18N23.2c (H18N23.2) mRNA, complete cds. 9/11 None
NM_171981 NCBI Caenorhabditis elegans H18N23.2a (H18N23.2) mRNA, complete cds. 9/11 None
GENEFINDER00000033485 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17624261:17627877:-1 9/11 None
SNAP00000033481 ENSEMBL cdna:SNAP chromosome:CEL140:X:17624265:17625611:-1 9/11 None
H18N23.2b ENSEMBL cdna:known chromosome:CEL140:X:17622626:17628155:-1 gene:H18N23.2 9/11 A 
H18N23.2c ENSEMBL cdna:known chromosome:CEL140:X:17623725:17640652:-1 gene:H18N23.2 9/11 None
H18N23.2a ENSEMBL cdna:known chromosome:CEL140:X:17623725:17628056:-1 gene:H18N23.2 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17624259-17625610(-) 100.0 100.0
Public Domain and Genome References
Ensembl H18N23.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM69103 Hypothetical protein H18N23.2b [Caenorhabditis elegans] ref|NP_741955.2| H18N23.2b [Caenorhabditis elegans] 0.0
blast NP_001024738 H18N23.2c [Caenorhabditis elegans] 1.0E-179
blast AAZ91346 Hypothetical protein H18N23.2c [Caenorhabditis elegans] 1.0E-174
blast AAM69102 Hypothetical protein H18N23.2a [Caenorhabditis elegans] ref|NP_741956.1| H18N23.2a [Caenorhabditis elegans] 1.0E-172
blast AAZ91346 Hypothetical protein H18N23.2c [Caenorhabditis elegans] 1.0E-172
blast NP_001024738 H18N23.2c [Caenorhabditis elegans] 1.0E-172
Protein Domains
Database ID Description E-Value
Pfam IPR005036 EMBL-EBI Putative phosphatase regulatory subunit 1.5E-18
Pfam IPR005036 EMBL-EBI Putative phosphatase regulatory subunit 1.5E-18
Pfam IPR005036 EMBL-EBI Putative phosphatase regulatory subunit 1.5E-18
Pfam IPR005036 EMBL-EBI Putative phosphatase regulatory subunit 1.5E-18
Pfam IPR005036 EMBL-EBI Putative phosphatase regulatory subunit 1.5E-18
Sequence
Target Sequence 
>C. ELEGANS:184349_AT
cggctcctgtctggaatctgatgtttaaacagcctgcagcggattatgttcgttttcggg
aaaacatggaaactacaatcattgatcttaatgctgaatacactggtgccaaaacatttg
ttatatctgaaatgttaattttctttgatttgtataaaccttttgactcaaaacttttta
ataaaccacttatatattatttttacttatattcaaacttgaatttttccttacagaaca
aagtgtcgctggaaaatgtgatcttaaacaatgaagcatacaaagtgatgggaacaatca
aagtgggcaatattgcatttgagaagagcgtttttgtgcgatacacaatgaatggctgga
tttcgtatatggataaagcggcgatataccaaccatccaccagcaaaattcaggacactt
tcaaattcgaccttgacctgccctcttctgtggagaagttacagatccaccaaattgagt
tttgcatttgtttcaaagcgaacggcaccgaatactgggactctaactcgggtacaaact
acgtgttgcactgcgagcagcaacagcatcctgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGCTCCTGTCTGGAATCTGATGTT 142 243 296 Antisense
GCAGCGGATTATGTTCGTTTTCGGG 546 313 331 Antisense
TTAATGCTGAATACACTGGTGCCAA 634 683 383 Antisense
TAAAGCGGCGATATACCAACCATCC 552 637 669 Antisense
CAACCATCCACCAGCAAAATTCAGG 280 187 685 Antisense
CTTTCAAATTCGACCTTGACCTGCC 431 217 713 Antisense
ACCTGCCCTCTTCTGTGGAGAAGTT 525 87 731 Antisense
GAACGGCACCGAATACTGGGACTCT 412 347 795 Antisense
TGGGACTCTAACTCGGGTACAAACT 424 515 811 Antisense
AACTACGTGTTGCACTGCGAGCAGC 406 139 832 Antisense
CTGCGAGCAGCAACAGCATCCTGCC 143 237 846 Antisense
Sequence Source Affymetrix Proprietary Database