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[184348_at]

Description C16C8.12 /REP_DB=WormBase Gene ID /WP=CE08223 /TR=P91051 /GB=AAB37854.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 16      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 31.1
(-2.7)
A 		25.8
(-3)
A 		49.5
(-1.6)
A 		130.1
(3)
A 		104
B 45.3
(-3)
A 		71
(2.4)
A 		73.9
(3)
P 		55.7
(-0.8)
P 		29
C 45.2
(-2)
P 		56.8
(3)
A 		42.8
(-3)
A 		44.2
(-2.4)
P 		14
avr 40.5
(-3) 		51.2
(-1.2) 		55.4
(-0.5) 		76.7
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 32.7
(-3)
A 		52
(-1.9)
P 		41.9
(-2.5)
A 		98.5
(0.6)
P 		128.1
(2.2)
P 		142.4
(3)
P 		110
B 38.4
(-2.2)
A 		17.4
(-3)
A 		60.6
(-1.4)
P 		46.7
(-1.9)
A 		148.5
(1.7)
P 		184.1
(3)
P 		167
C 37.5
(-2.9)
M 		35.8
(-3)
A 		36.6
(-3)
A 		56.7
(-2.1)
P 		138
(1.3)
P 		178.5
(3)
P 		143
avr 36.2
(-3) 		35.1
(-3) 		46.4
(-2.5) 		67.3
(-1.5) 		138.2
(1.6) 		168.3
(3) 		133
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 11.3
(-0.4)
A 		5.6
(-3)
A 		13
(0.3)
A 		19
(3)
A 		13
B 14.4
(-0.3)
A 		17.5
(3)
A 		17.1
(2.6)
P 		11.9
(-3)
P 		6
C 15
(2.1)
P 		16.3
(3)
A 		14.9
(2)
A 		7.5
(-3)
P 		9
avr 13.6
(-0.8) 		13.1
(-2.2) 		15
(3) 		12.8
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 6
(-3)
A 		18.5
(-0.7)
P 		9.1
(-2.4)
A 		25
(0.5)
P 		38.7
(3)
P 		34.7
(2.3)
P 		33
B 13.3
(-2.3)
A 		5.8
(-3)
A 		14.7
(-2.2)
P 		12.4
(-2.4)
A 		60.3
(2.2)
P 		68.7
(3)
P 		63
C 13.9
(-2.5)
M 		10.9
(-2.8)
A 		9.3
(-3)
A 		11.4
(-2.8)
P 		44.7
(1.2)
P 		59.8
(3)
P 		51
avr 11.1
(-3) 		11.7
(-2.9) 		11
(-3) 		16.3
(-2.3) 		47.9
(2.1) 		54.4
(3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184348_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5034
Sequence Type Exemplar sequence
Representative Public ID C16C8.12 NCBI
Target Description C16C8.12 /REP_DB=WormBase Gene ID /WP=CE08223 /TR=P91051 /GB=AAB37854.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062146(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062146 NCBI Caenorhabditis elegans C16C8.12 (C16C8.12) mRNA, complete cds. 11/11 None
GENEFINDER00000014806 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3452726:3453508:1 11/11 None
C16C8.12 ENSEMBL cdna:known chromosome:CEL140:II:3452726:3453507:1 gene:C16C8.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014782 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3452724-3453507(+) 93.71 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C8.12
Entrez Gene 182678 Entrez gene
SwissProt P91051 EMBL-EBI
WormBase CE34693 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37854 Hypothetical protein C16C8.12 [Caenorhabditis elegans] ref|NP_494547.2| C16C8.12 [Caenorhabditis elegans] 7.0E-87
blast AAB37854 Hypothetical protein C16C8.12 [Caenorhabditis elegans] ref|NP_494547.2| C16C8.12 [Caenorhabditis elegans] 3.0E-80
blast AAB37855 Hypothetical protein C16C8.13 [Caenorhabditis elegans] ref|NP_494546.1| C16C8.13 [Caenorhabditis elegans] 3.0E-28
blast AAB37856 Hypothetical protein C16C8.14 [Caenorhabditis elegans] ref|NP_494545.1| C16C8.14 [Caenorhabditis elegans] 4.0E-28
blast T29401 hypothetical protein C16C8.15 - Caenorhabditis elegans 1.0E-24
blast AAB37856 Hypothetical protein C16C8.14 [Caenorhabditis elegans] ref|NP_494545.1| C16C8.14 [Caenorhabditis elegans] 3.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR000626 EMBL-EBI Ubiquitin 1.2E-6
Sequence
Target Sequence 
>C. ELEGANS:184348_AT
tgtccgaattccaaaagctctgcgctgaaacttcgagaatacagaatgagttcagagaga
tacccagctctgcggggaatgcactgctcaaggacactcaggagatgtgccagaagattt
tgaagaaacaagacgaacttcacgatgagatgaagcatgttcaggaaagcttgatgtcgg
agttgaattctgtgaagaatgagctgaagcatgcgaaatcgattaatgatcttattgcaa
agaatgctgataaaaatctggaaactttgctgaaaattcaaaaaactcaagatcaaatta
tgatgaagcttctggaaggagacgctatggagaagatgggaggactagttttgaaaaata
tcccagacgagcctgaaaagcctgaaaagcctgaaaagcctgaaaatgaaaatttctcgc
tcaacatcagtccagctgcgtggagagtggactgtttacaccaccggcaaactctacccg
cttctgataaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCCGAATTCCAAAAGCTCTGCGC 403 557 35 Antisense
AGCTCTGCGCTGAAACTTCGAGAAT 688 79 50 Antisense
GATACCCAGCTCTGCGGGGAATGCA 422 423 93 Antisense
GGAATGCACTGCTCAAGGACACTCA 618 531 110 Antisense
AGGACACTCAGGAGATGTGCCAGAA 391 55 125 Antisense
CAGGAAAGCTTGATGTCGGAGTTGA 285 207 196 Antisense
ATCCCAGACGAGCCTGAAAAGCCTG 127 31 394 Antisense
AAAATTTCTCGCTCAACATCAGTCC 354 133 443 Antisense
ACATCAGTCCAGCTGCGTGGAGAGT 708 103 458 Antisense
AGAGTGGACTGTTTACACCACCGGC 356 63 478 Antisense
AAACTCTACCCGCTTCTGATAAAGT 149 115 503 Antisense
Sequence Source Affymetrix Proprietary Database