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[184345_at]

Description Y73F8A.15 /REP_DB=WormBase Gene ID /WP=CE22984 /TR=Q9NA57 /GB=CAB60540.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 49      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 1.9
(-3)
A 		35.8
(2.8)
A 		37.2
(3)
A 		6.6
(-2.2)
A 		35
B 1.9
(-3)
A 		8.7
(3)
A 		5.4
(0.1)
A 		3.9
(-1.2)
A 		7
C 2.2
(-3)
A 		4.8
(2.2)
A 		5.1
(2.8)
A 		5.2
(3)
A 		3
avr 2
(-3) 		16.4
(3) 		15.9
(2.8) 		5.2
(-1.7) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 7.2
(-2.4)
A 		3.5
(-3)
A 		7.3
(-2.4)
A 		4.9
(-2.8)
A 		17.7
(-0.9)
A 		43.5
(3)
A 		40
B 3.3
(-2.9)
A 		2.9
(-3)
A 		3.2
(-2.9)
A 		5.8
(-2.2)
A 		24.7
(3)
A 		12.7
(-0.3)
A 		22
C 0.8
(-3)
A 		21.7
(-0.9)
A 		2.6
(-2.8)
A 		1.7
(-2.9)
A 		58.6
(2.9)
A 		59.6
(3)
A 		59
avr 3.8
(-3) 		9.4
(-2) 		4.4
(-2.9) 		4.1
(-2.9) 		33.7
(2.2) 		38.6
(3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.7
(-3)
A 		7.8
(1.7)
A 		9.7
(3)
A 		1
(-2.8)
A 		9
B 0.6
(-3)
A 		2.1
(3)
A 		1.3
(-0.2)
A 		0.8
(-2.2)
A 		2
C 0.7
(-3)
A 		1.4
(0.8)
A 		1.8
(3)
A 		0.9
(-1.9)
A 		1
avr 0.7
(-3) 		3.8
(2.2) 		4.3
(3) 		0.9
(-2.7) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 1.3
(-2.9)
A 		1.2
(-3)
A 		1.6
(-2.7)
A 		1.3
(-2.9)
A 		5.3
(-0.4)
A 		10.6
(3)
A 		9
B 1.2
(-2.7)
A 		1
(-2.9)
A 		0.8
(-3)
A 		1.5
(-2.5)
A 		10
(3)
A 		4.7
(-0.5)
A 		9
C 0.3
(-3)
A 		6.6
(-1.1)
A 		0.7
(-2.9)
A 		0.3
(-3)
A 		19
(2.7)
A 		20
(3)
A 		20
avr 0.9
(-3) 		2.9
(-1.9) 		1
(-2.9) 		1
(-2.9) 		11.4
(2.8) 		11.8
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184345_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8509
Sequence Type Exemplar sequence
Representative Public ID Y73F8A.15 NCBI
Target Description Y73F8A.15 /REP_DB=WormBase Gene ID /WP=CE22984 /TR=Q9NA57 /GB=CAB60540.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070449(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070449 NCBI Caenorhabditis elegans Y73F8A.15 (Y73F8A.15) mRNA, complete cds. 11/11 None
GENEFINDER00000030911 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15321583:15322142:1 11/11 None
Y73F8A.15 ENSEMBL cdna:known chromosome:CEL140:IV:15321583:15322142:1 gene:Y73F8A.15 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030817 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15321588-15322148(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73F8A.15
Entrez Gene 190677 Entrez gene
SwissProt Q9NA57 EMBL-EBI
WormBase CE22984 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60540 Hypothetical protein Y73F8A.15 [Caenorhabditis elegans] ref|NP_502850.1| Y73F8A.15 [Caenorhabditis elegans] 5.0E-65
blast CAB70229 Hypothetical protein Y73F8A.14 [Caenorhabditis elegans] ref|NP_502849.1| Y73F8A.14 [Caenorhabditis elegans] 7.0E-22
blast CAB70228 Hypothetical protein Y73F8A.12 [Caenorhabditis elegans] ref|NP_502847.1| Y73F8A.12 [Caenorhabditis elegans] 3.0E-21
Sequence
Target Sequence 
>C. ELEGANS:184345_AT
tctttgccagtgctccagtggatgatggttccatggaaatcgtgcgagatttcattcaaa
atatggagaatgatgctcaatcatcgaataaaagtgcatttgctgactgttttatggata
ctttcaattttaatgttcgtgggaggatttttaccaaagctctattcgtggaaagctacc
ttaccaagccgaatcccgagccattgatcctcaaatcatcgatttttactcaaggaaaaa
atgaaatcaagttcaatgtttcacatgtagttgggccaagaaccaatattgctgatttct
atctattgcgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTTGCCAGTGCTCCAGTGGATGA 648 615 20 Antisense
GCTCCAGTGGATGATGGTTCCATGG 155 299 31 Antisense
TAAAAGTGCATTTGCTGACTGTTTT 128 639 108 Antisense
TGCTGACTGTTTTATGGATACTTTC 507 581 120 Antisense
GGATTTTTACCAAAGCTCTATTCGT 558 451 164 Antisense
GCTCTATTCGTGGAAAGCTACCTTA 462 297 178 Antisense
GAAAGCTACCTTACCAAGCCGAATC 345 359 190 Antisense
TCCCGAGCCATTGATCCTCAAATCA 205 597 213 Antisense
ATGTTTCACATGTAGTTGGGCCAAG 353 47 275 Antisense
GGGCCAAGAACCAATATTGCTGATT 301 493 292 Antisense
ATTGCTGATTTCTATCTATTGCGTG 164 7 307 Antisense
Sequence Source Affymetrix Proprietary Database