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[184344_s_at]

Description Y57G7A.6 /REP_DB=WormBase Gene ID /WP=CE19635 /TR=O76623 /GB=AAC26299.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 36.3
(-2.3)
A 		44.4
(-1.5)
A 		29.8
(-3)
A 		88.9
(3)
P 		59
B 35.3
(3)
A 		26.2
(0.3)
A 		22
(-1)
A 		15.3
(-3)
A 		20
C 38.2
(-1.4)
A 		36.9
(-1.6)
A 		24.3
(-3)
A 		77.4
(3)
P 		53
avr 36.6
(-1.1) 		35.8
(-1.2) 		25.4
(-3) 		60.5
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 23.8
(-2.6)
A 		17.3
(-2.9)
A 		18.4
(-2.8)
A 		15.6
(-3)
A 		75
(0.2)
M 		127.5
(3)
P 		112
B 20.2
(-1.9)
A 		38.2
(-0.4)
A 		21
(-1.8)
A 		6.5
(-3)
A 		60.4
(1.3)
P 		81
(3)
P 		75
C 16.6
(-2.3)
A 		29
(-1.4)
A 		27.2
(-1.6)
A 		5.9
(-3)
A 		52.9
(0.2)
A 		94.1
(3)
P 		88
avr 20.2
(-2.3) 		28.2
(-1.8) 		22.2
(-2.2) 		9.3
(-3) 		62.8
(0.5) 		100.9
(3) 		92
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 13.2
(3)
A 		9.6
(-1)
A 		7.8
(-3)
A 		13
(2.8)
P 		5
B 11.3
(3)
A 		6.5
(-0.6)
A 		5.1
(-1.7)
A 		3.3
(-3)
A 		8
C 12.6
(2.5)
A 		10.6
(-0.2)
A 		8.5
(-3)
A 		13
(3)
P 		5
avr 12.4
(3) 		8.9
(-1) 		7.1
(-3) 		9.8
(0.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 4.4
(-2.9)
A 		6.2
(-2.5)
A 		4
(-3)
A 		4
(-3)
A 		22.6
(1.1)
M 		31
(3)
P 		27
B 7
(-1.9)
A 		12.7
(-0.7)
A 		5.1
(-2.3)
A 		1.7
(-3)
A 		24.5
(1.8)
P 		30.2
(3)
P 		29
C 6.1
(-2)
A 		8.8
(-1.5)
A 		6.9
(-1.9)
A 		1.2
(-3)
A 		17.1
(0.1)
A 		31.5
(3)
P 		30
avr 5.8
(-2.3) 		9.2
(-1.6) 		5.3
(-2.4) 		2.3
(-3) 		21.4
(1) 		30.9
(3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184344_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5044
Sequence Type Exemplar sequence
Representative Public ID Y57G7A.6 NCBI
Target Description Y57G7A.6 /REP_DB=WormBase Gene ID /WP=CE19635 /TR=O76623 /GB=AAC26299.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061537(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061537 NCBI Caenorhabditis elegans Y57G7A.6 (Y57G7A.6) mRNA, complete cds. 11/11 None
SNAP00000014153 ENSEMBL cdna:SNAP chromosome:CEL140:II:1279778:1284410:-1 11/11 None
GENEFINDER00000014168 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1281679:1285625:-1 11/11 None
Y57G7A.6 ENSEMBL cdna:known chromosome:CEL140:II:1282015:1285575:-1 gene:Y57G7A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1282013-1285519(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57G7A.6
Entrez Gene 173506 Entrez gene
SwissProt O76623 EMBL-EBI
WormBase CE19635 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26299 Hypothetical protein Y57G7A.6 [Caenorhabditis elegans] ref|NP_493938.1| Y57G7A.6 [Caenorhabditis elegans] 0.0
blast CAB04332 Hypothetical protein F36G9.13 [Caenorhabditis elegans] ref|NP_507009.1| F36G9.13 [Caenorhabditis elegans] 0.0
blast CAB07556 Hypothetical protein C06C6.6 [Caenorhabditis elegans] ref|NP_507011.1| C06C6.6 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.3E-24
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.3E-24
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493938.1 1 755-777
Y57G7A.6 1 755-777
SNAP00000014153 1 609-631
GENEFINDER00000014168 2 33-52,790-812
Sequence
Target Sequence 
>C. ELEGANS:184344_S_AT
gagaatctctcctgaaactttccaagttggaccttgaattctctcgctacaaatctgcgc
tgactattatgccggacgttttgaactctgttggtgctggcttcaagggcaaaaagcttg
atttacctgtcagtggaggtggagtgaataatgtctcaacaagtacacaatttgcaatcg
ttggtgaccccaacagtgctcttaagtacactgttacgatattgatcattggcgccgttt
tgggaactatcgcttttctatggtgttggcgtgatcagaattgcatctatcataagctca
ggagacactactttaagccaaaccacaacatgaagactgctcgagaagtggacccgaact
ctcagaaaccggtggcaagtcaatctgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAATCTCTCCTGAAACTTTCCAA 455 391 2075 Antisense
ACCTTGAATTCTCTCGCTACAAATC 674 85 2105 Antisense
ATCTGCGCTGACTATTATGCCGGAC 70 33 2127 Antisense
TATGCCGGACGTTTTGAACTCTGTT 129 653 2142 Antisense
TGAACTCTGTTGGTGCTGGCTTCAA 3 575 2156 Antisense
AATTTGCAATCGTTGGTGACCCCAA 86 173 2243 Antisense
GATCATTGGCGCCGTTTTGGGAACT 82 421 2298 Antisense
GGAACTATCGCTTTTCTATGGTGTT 624 529 2317 Antisense
GACTGCTCGAGAAGTGGACCCGAAC 668 373 2409 Antisense
GGACCCGAACTCTCAGAAACCGGTG 592 513 2424 Antisense
GAAACCGGTGGCAAGTCAATCTGAA 146 359 2439 Antisense
Sequence Source Affymetrix Proprietary Database